RNA id: TU185671


Basic Information

Item Value
RNA id TU185671
length 219
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G147565
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1588077 ~ 1588295 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatttgcaactgttgtcacaggaacatcaagctgcttggagatggtcttgcagcctttacctttaccatggttgtctattttctttctgatctcctcagacaactctctcctttgctttctctggtccatgttcagtgtggtgcacacaatgataccaaatggcacagtcactactttcctccatttaaataggctgaatgactgattacaagattgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185670 lncRNA upstream 1753 1586057 ~ 1586324 (+) True G147564
TU185655 lncRNA upstream 95764 1489580 ~ 1492313 (+) True G147551
TU185557 lncRNA upstream 399035 1188808 ~ 1189042 (+) True G147466
TU185454 lncRNA upstream 413775 1172759 ~ 1174302 (+) True G147380
TU185471 lncRNA upstream 518307 904970 ~ 1069770 (+) True G147393
TU185686 lncRNA downstream 25015 1613310 ~ 1615951 (+) True G147579
TU185687 lncRNA downstream 30877 1619172 ~ 1620075 (+) True G147580
TU185772 lncRNA downstream 232062 1820357 ~ 1829543 (+) True G147635
TU185815 lncRNA downstream 470238 2058533 ~ 2058770 (+) False AMCG00000073
TU185836 lncRNA downstream 702845 2291140 ~ 2358137 (+) True G147688
AMCG00000056 mRNA upstream 205023 1361377 ~ 1383054 (+) True AMCG00000056
AMCG00000055 mRNA upstream 293312 1243198 ~ 1294765 (+) True AMCG00000055
AMCG00000054 mRNA upstream 423673 1139043 ~ 1164404 (+) True AMCG00000054
AMCG00000053 mRNA upstream 545474 991040 ~ 1042603 (+) True AMCG00000053
AMCG00000052 mRNA upstream 609533 957706 ~ 978544 (+) True AMCG00000052
AMCG00000057 mRNA downstream 104857 1693152 ~ 1719606 (+) True AMCG00000057
AMCG00000066 mRNA downstream 152514 1740809 ~ 1781771 (+) True AMCG00000066
AMCG00000067 mRNA downstream 272213 1860508 ~ 1860744 (+) True AMCG00000067
AMCG00000072 mRNA downstream 425252 2013547 ~ 2034642 (+) True AMCG00000072
AMCG00000073 mRNA downstream 447728 2036023 ~ 2058765 (+) True AMCG00000073
TU185496 other upstream 471127 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 1089566 449652 ~ 498511 (+) True G147311
TU185240 other upstream 1341072 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 1522788 64746 ~ 65289 (+) False AMCG00000025
TU185221 other upstream 1551503 35282 ~ 36574 (+) False AMCG00000026
TU185878 other downstream 815435 2403730 ~ 2403972 (+) True G147726
TU186234 other downstream 2104814 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 2132690 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 2171884 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 3846863 5435158 ~ 5435762 (+) False AMCG00000142

Expression Profile