RNA id: TU185696


Basic Information

Item Value
RNA id TU185696
length 2615
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G147588
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1613333 ~ 1619067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGACATCTTCCAATAATTATTTGTAGGTATGGATCACAATTCTATGGGGTGATTTTCCCTGCAACAGTCTAGCACAGGAGTGAATAATTACTGGAACTGTATACAGTAATCTTTTAGCTAATTTAATATGTTACAGCTGTGCcaacatttattgattgattttgtgtttttgtttttatttcacaagaTCCCCTTAATTTCACTATTTTAAACCTGGCTGAATGTGGAAGTTTTCTGCATATGTGACACTAATGGCTACAGACTGTATAAAGGTATGAAAGTCAGTTGGTTTAATGAAGCTGGTGTTGTAAATGTGACGTTTTAAGACTTGTAAATGTGAAGTATTCAGACTTGTCAAAGGCCTGCAAGTTTTCCCTTGCAGAATGATGGATTTGGGGTGAAAATTAAGTTTGGGAAAGCACgtacattgtttaattaaacatttgagtATTCATCACTGCTTCTAACATGGCCTGCATAGTATTGAGAGAAATGCATTGCTCTAGTAATTTACAAAAACGAGAGTATTGATATTCAGctatttgattgtttattttaagaagtgaaatccatatttttttgttgaaatTACTTAATGAACTACACTACTACAGGGCCCTTTactttctgtttttgatttgtacTGCCTTTACCAGATTTTTTGTCAATCTCTTagtttcttaatttaaatgtagattGTTTTGCCTCTGAAGTTTGAATCCATTTGAagcacagtaaaaaaaataggaaGCAGATTAATGTATTATGGTAAATGTGCCTGGTTTGTGTAGTTTGGGGCTTCCTTTAGTTGCAGTAAACTTTTAAAAACccttacattttgtgtttctgagATCAACATCCAAAAACATATTACTGGTCAGCCTAAACGAGTGTTCTGATACACTTCTTACCACAGACTATTTCAGTTGCCATCTCCTTTGCATATTTGCAAAAGAAGAACACCTTGATCTATAGAACATTTGATCTGTTATGTCTGCATAATGGAGTGATTGTGTAGCTCAGTCTAAATTGCTCAGTCTAATTGAGTTGAACAAGTTTGTTAGTGTAATGTTAGGTTGATCATGTAAAAGTGTTTCCTGAAAATGCATACATCATAGTGGGGATGGATGGCTTGATCAGTACAGCTCAAAGAACCTTTTACAATCTGTCAAAATAACTCAAGCTATTActattttcaaaagctgaatttcattgttattttattttatttgaatgcagctTTACCTCCATATTTAGGAAAATGTCCAGGAAAGGCTATCGTGCATGTTTGCTACTCTTATAATAATGCTCGAAAACCCATCAACTGATCCCAGAtactattcaccccccccccctccccttgtTAAACACATTGATAATGAACCAACTCTTCTGCAGATCAACATTGCACTATGCTTGAACCCTGGTCCACATTCTTGTTAAGTGTGTAGATAATGTAAAACCTTCAAaggtattttcagtgttttggtACTTGAACAGTATCCACAATGGGCACTGCATACACCTAACATCTACAGTATAGTGTAACCCAGTGCTCAACAATGAGATGGGATGCATCAGAAGCAGGTGTAGtgtaccatttttatttcaaacattcaCAAGCCAGCAAACTAACCTTAAGTGTAGCTGCTCAGAActtttaatatatactgtaaaaagttataatcataataataatcttaagtatttataataagaaaaataagaagaataaatgatcaataaccTGTGCAATGGTGAGAGaagaaagttaaattaaattaattatttgttgaaagtaatgtttttactttattgccagacttccattttattttcttctgctgtgTACCTTATCTAGTTAACCACACTCTGaagatatttttagttttatttattctagaGAGAACTAGATAGGGTTTATGTTGCTCTCTTTGTGGCATGTCTATTCGCAAAGCCCACCAGTGCATGTGGGAGTTTGTACTAAAAAtctatgaatacaaaataaaaataaaataaaaaaataaccaaaaaaaaacaactgtcttAGTAATCAATGCATTCATAGCCACTGCTCTTTCACTAGACAGCCTCTAGAGTATAACTCAATCAATCACATACATGGACAAAAAAAGGCTACATTGTGGACACTGCGATTTTCTCACCTCTAGCTTACTGAAATACCAAATtgactaaaatatataatgtagaCATTCTCTAGTTTACTCCACAGCTTTTGgtacagtttgtgtgtctgcctgagaggtactgatttatttttcatcctttGCTGTGTGCAATTGCAATTGCAAAGGCCTGTGCAATTGATCCAGTTTGTACATGGAaagctctaaaaaaaaaagtgttaaattcatcTGTTATTTCCACACCATTAAATGTATGTCTTCAGCAACGCTTCTTTCGGTCATGTAACAATGTATAGGAAAAAAAGAATGTACCTAGCGAAAGAACTGCATTGTACATACAAGctgtaattatttatgtttctttaatttgtacCATATCAATGCCTTGtacagtgttttatgttttgttttcaaattattttgtattttatttttataaactggttataaataaaatattcattcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185558 lncRNA downstream 424290 1188799 ~ 1189043 (-) True G147467
TU185499 lncRNA downstream 439031 1172316 ~ 1174302 (-) True G147419
TU185500 lncRNA downstream 439031 1172316 ~ 1174302 (-) False G147419
TU185516 lncRNA downstream 672498 932723 ~ 940835 (-) True AMCG00000050
TU185503 lncRNA downstream 725454 828455 ~ 887879 (-) True G147420
TU185698 lncRNA upstream 99 1616046 ~ 1619067 (-) False G147588
TU185777 lncRNA upstream 204414 1820361 ~ 1829348 (-) True G147639
TU185783 lncRNA upstream 234976 1850923 ~ 1851379 (-) True G147645
TU185827 lncRNA upstream 470411 2086358 ~ 2119964 (-) True G147681
TU185855 lncRNA upstream 685251 2301198 ~ 2364242 (-) True G147704
AMCG00000064 mRNA downstream 2122 1585546 ~ 1611211 (-) True AMCG00000064
AMCG00000059 mRNA downstream 69307 1489471 ~ 1544026 (-) True AMCG00000059
AMCG00000058 mRNA downstream 125244 1484520 ~ 1488089 (-) True AMCG00000058
AMCG00000062 mRNA downstream 171418 1392809 ~ 1441915 (-) True AMCG00000062
AMCG00000065 mRNA downstream 270980 1303939 ~ 1342353 (-) True AMCG00000065
AMCG00000060 mRNA upstream 3135 1619082 ~ 1642652 (-) True AMCG00000060
AMCG00000061 mRNA upstream 38378 1654325 ~ 1664847 (-) True AMCG00000061
AMCG00000063 mRNA upstream 107703 1723650 ~ 1736101 (-) True AMCG00000063
AMCG00000068 mRNA upstream 272303 1888250 ~ 1903755 (-) True AMCG00000068
AMCG00000069 mRNA upstream 737053 2353000 ~ 2354076 (-) True AMCG00000069
TU185384 other downstream 1127750 484720 ~ 485583 (-) True G147324
TU185352 other downstream 1220851 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 1221198 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 3722862 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 4445375 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 4534773 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 4593327 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 4599809 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile