RNA id: TU185698


Basic Information

Item Value
RNA id TU185698
length 3022
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G147588
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1613333 ~ 1619067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttaaaataaacctgGATTATTAATTAGGAATGCATATTTGGTTTAACGAAAACTATTATAAAGCAGTTTACTTTAGAGTATTCCACATTGAGAATTTAGACCTCTGAAGTTTTGGTTTAGGAAGAAAAGAGATGAAAACAGCAGGAATGTATGAGTGAgaagttaattaattttttcttcagattaagaaaacaatttacaTGATCTGGAAGGACAAAAATATGCACGTTATCTTccaaaagaaacacacacatacaattatgTAGATCTTGTGGTGAATTTCAGTCCTGTACCTTTTTACTTGGAATTCTACCAGTGGTAAAGCAGACATGGTCCTGTGACTGAGGGTTTCCAGAATGGAGGTAGACTGGATTGTCcaaggagagaaagggagagaaatcTGTTGATCAATGCATCAAGAGATGCTCAGTTTAGAAAAATGCTAGACAAGTAATGTAATGATGTAAGGATTTGGAACACCATGCATTGACAGGAATAACAGGATTTGCAGTTTTACCATCAATGCCAAACCACattcctgtttctcctcctaTTTTACAGAGTTGCCTTTTCCTCCTCTGTAACCCTCTTACTGCACTCTATCTAACCTTCAACTTTAGCATTCCTAGCCCTCTGCAGCCACATGCCGTTGGATAATACTCGGTACGCCTCTTACCAAACGCAATAATTCCTGATGTCTGTGTTATAACTTGaagaacacacacagagcagcctTTCAAATGCCACTGTGCATAGGGGGGGATGTAACAGTTTACACCAGTCTATTTAACTTAATTCTTAATTCTCATACCAGATTTATCTTCTGGTTCTGTAGAACTGGGCTACACCAGCAGTGTAAAGTACACACACTGCATTGAGCAGGAGGGGGTCGGGTATGCCATGATTCACTTCAGGCTCCCACGTGAACTGTGTCCGCACTCCAGTTTAATTTCTGAGCCCCTCTACTTTCCGCTCTCCACGGTTCGCTCTTTTTCACTGTATCCATAGTGCGGTTAACAGGAATATAGGACACAGGCAATGCACCTGTGTGTATCCAGATAATCACACTAAACATCTGCATTCGTTTTCCACATTGTGGAGgtagatttatttaattgacatatttatttatttattgttatttattatttattcatgtatttattgaatgcaTAGAACCTTTTTCTATTGTGTGCGCTTCAGATTCCCCATCAATAAGTTTCTCATTCTCTTGTAACAGGTCATGCTGccttattaaaattatatatcttCACAGAACACAAGCATAGATACAGTGGACTAAATAAAGGGGGTTAAAAACAGAGCGCTGCTTAGATCATCATCACTTGTTCGGAAGAACCTGGAATTGCCAACTACTCCTTGTCCTTAATACAGTGTCCCTTACTAACCTCTTGTCATAGCTTCTTCACAATGAGCCATCCTCAAAAACTCTCCCAAACGGCACTCTCAGGTAGGGCTCAGAGAAGTGCTGCCTGCCTCCATCCTGTGAAAAAGAGCCCCTTTGAATCCATGTGTTAGATGTTTCCATACTGTGAGCATTTGCCACTAACAGAAGGGTATCCAACTGGTTATAATATCTGATGGAATAAtcagatttttctttctatttttaaatataattgttattgtCTGGGTAGGATGATGAGCTTGTGTGGGCACTCATGTACCCAGCAAAATGCTCTTTAGTTTCAATAATTTGCACTAACGATATTTGTTagtatgtaatgtatataatgtgcaACTACGCATAACCAGTTTGATTCCCTTTGGTATGTGAACTGCTTTGGAAAAAGCCTAAGTTTTCGAAGTggtcaaaataactgaatttaaGATCCTTGCACCAAAGATGAAATCTACTCCATCTTTAGTGGAAAGgaatttttaaattttacatgAAACTTGAAGTGATAATTTTACAACTACAAGGGGCATATTTAGGTATGTTGAAGATTCTTAACTTGATGTGCttttggaaaaaactaaatgcatttcagtgcaCTACACACTAATCATATCCACTATATTCTTCCTTTTGGGAAATCGCTATACAGTTTAAGGAGTATCAGAGGAGgtgcattaaacactgcagCGGTTCataatatttatcttttaacttgttttcaattttattttttggtttaatataACACAATAGCCATAAAGTCCAGCATCTTAGGCACTTCAGAAAGTTACTAAATACAAACATCACCATTCCCATGTACTGAAATACTATAACCATAATGCTTTCATTTCCTTTGAACTTGTAAGATACTGTAATATAGGTCATATCAATACTATTTGCATGCACTACGAAAAGTAATCAACGTACAAGTATTCATCAGTCCGTCATTTCTCAGAAGATTGTAATCCAAGAAGGACAAACGCTGTAGATATCTCAGATGTAGTATtatgatgattttattttatttcataaattCATGTGCCTCTGATCAATGTGGGCTTTTCtagcttcatttatttattatgtattattttattgttattttatttttatgaagctGTCTGGTGTGTTGAGCTAAATACCTTACATTGTTGTTCCCTTTCAAAGCAGGGATATGGGGCTTCTGGCCTAAGAGATATATATGAGCATTGTCCACTGATGCACTTGTATTATGAAGCCAAATGTAAAGATGGACAAGATCTAGTTTGTTGCACTGTGAAGGATTTTTGAAGCAATGTTttctaatcaaattaaatgttagatTAAGACTAAAACTATCTTCTCTACCCTAAAATGAGGACAGTACTGAGCCCCCCCACCCTAtctttaaaaaaggaaaccaattTTTAAGGAGAACTTTGTGAGGCTTTTATGAACAAGCAAGCGGTTTGCTTATCTTGTTACCATATATCAAAGCCTCAAACTTGAACTGTCCTCTGTCTGCTTGCAGCACTCTTTCTTTGATCTGACTTCCAACCAGAGTTCTTCAGAAATGCCAGCCCtgtcattgtatttgtttccagaATAGCTCACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185696 lncRNA downstream 99 1613333 ~ 1615947 (-) False G147588
TU185558 lncRNA downstream 427003 1188799 ~ 1189043 (-) True G147467
TU185499 lncRNA downstream 441744 1172316 ~ 1174302 (-) True G147419
TU185500 lncRNA downstream 441744 1172316 ~ 1174302 (-) False G147419
TU185516 lncRNA downstream 675211 932723 ~ 940835 (-) True AMCG00000050
TU185777 lncRNA upstream 201294 1820361 ~ 1829348 (-) True G147639
TU185783 lncRNA upstream 231856 1850923 ~ 1851379 (-) True G147645
TU185827 lncRNA upstream 467291 2086358 ~ 2119964 (-) True G147681
TU185855 lncRNA upstream 682131 2301198 ~ 2364242 (-) True G147704
TU185874 lncRNA upstream 763947 2383014 ~ 2383214 (-) True G147722
AMCG00000064 mRNA downstream 4835 1585546 ~ 1611211 (-) True AMCG00000064
AMCG00000059 mRNA downstream 72020 1489471 ~ 1544026 (-) True AMCG00000059
AMCG00000058 mRNA downstream 127957 1484520 ~ 1488089 (-) True AMCG00000058
AMCG00000062 mRNA downstream 174131 1392809 ~ 1441915 (-) True AMCG00000062
AMCG00000065 mRNA downstream 273693 1303939 ~ 1342353 (-) True AMCG00000065
AMCG00000060 mRNA upstream 15 1619082 ~ 1642652 (-) True AMCG00000060
AMCG00000061 mRNA upstream 35258 1654325 ~ 1664847 (-) True AMCG00000061
AMCG00000063 mRNA upstream 104583 1723650 ~ 1736101 (-) True AMCG00000063
AMCG00000068 mRNA upstream 269183 1888250 ~ 1903755 (-) True AMCG00000068
AMCG00000069 mRNA upstream 733933 2353000 ~ 2354076 (-) True AMCG00000069
TU185384 other downstream 1130463 484720 ~ 485583 (-) True G147324
TU185352 other downstream 1223564 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 1223911 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 3719742 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 4442255 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 4531653 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 4590207 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 4596689 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile