RNA id: TU185777


Basic Information

Item Value
RNA id TU185777
length 608
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G147639
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1820361 ~ 1829348 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGACGAGGCGCACAGTGCAGTGAGGAGGGGTTGAAATAAGCAGGTGGGCCGCAGTAAAGCAGGGTGGCACCTTGATAACTTCTCACAGGATATTCTACTGAGTTGAAGGCAGCGAAAATACTTGCAAACATGCCTAAGTGTCCTAAGTGCACGAAAGAAGTGTATTTTGCTGAGAGAGTGACTTCCCTTGGAAAAGACTGGCACAGACCCTGCCTGAAATGTGAGAAGTGTGGTAAGACCTTGGCAGCAGGATCACATGCAGAGCATGAAGGAAAACCCTACTGTAATAATCCATGCTACTCTGCACTTTTTGGACCCAAAGgaTTTGGACGTGGAGGAACTGAAAGCCACACTTTCAAATAGATTACAATGCAGGTTATCCATCTAACATGTaatggaggaggagagaaggtgGCATTCATGAagccttttgtttgttttatatacctagtaatgtaatgcttttaatcTAAAACACCAacaatagttttgttttgttttttgtaattgaaatatatcCCTCaactttacaaaaacataacactGCTGTATCTCGATTACCATGAACTGGTTTGAAGTGTATACAATAAagctttaactttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185695 lncRNA downstream 201294 1613333 ~ 1619067 (-) True G147588
TU185698 lncRNA downstream 201294 1616046 ~ 1619067 (-) False G147588
TU185696 lncRNA downstream 204414 1613333 ~ 1615947 (-) False G147588
TU185558 lncRNA downstream 631318 1188799 ~ 1189043 (-) True G147467
TU185499 lncRNA downstream 646059 1172316 ~ 1174302 (-) True G147419
TU185783 lncRNA upstream 21575 1850923 ~ 1851379 (-) True G147645
TU185827 lncRNA upstream 257010 2086358 ~ 2119964 (-) True G147681
TU185855 lncRNA upstream 471850 2301198 ~ 2364242 (-) True G147704
TU185874 lncRNA upstream 553666 2383014 ~ 2383214 (-) True G147722
TU185877 lncRNA upstream 574050 2403398 ~ 2403618 (-) True G147725
AMCG00000063 mRNA downstream 84260 1723650 ~ 1736101 (-) True AMCG00000063
AMCG00000061 mRNA downstream 155514 1654325 ~ 1664847 (-) True AMCG00000061
AMCG00000060 mRNA downstream 177709 1619082 ~ 1642652 (-) True AMCG00000060
AMCG00000064 mRNA downstream 209150 1585546 ~ 1611211 (-) True AMCG00000064
AMCG00000059 mRNA downstream 276335 1489471 ~ 1544026 (-) True AMCG00000059
AMCG00000068 mRNA upstream 58902 1888250 ~ 1903755 (-) True AMCG00000068
AMCG00000069 mRNA upstream 523652 2353000 ~ 2354076 (-) True AMCG00000069
AMCG00000087 mRNA upstream 978346 2807694 ~ 2819520 (-) True AMCG00000087
AMCG00000100 mRNA upstream 1191069 3020417 ~ 3050033 (-) True AMCG00000100
AMCG00000095 mRNA upstream 1283771 3113119 ~ 3114141 (-) True AMCG00000095
TU185384 other downstream 1334778 484720 ~ 485583 (-) True G147324
TU185352 other downstream 1427879 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 1428226 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 3509461 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 4231974 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 4321372 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 4379926 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 4386408 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile