RNA id: TU185783


Basic Information

Item Value
RNA id TU185783
length 457
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G147645
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 1850923 ~ 1851379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccctctcccgaatactaactctagtgcttctcctttcctttgtccagttcAACCAGCTCTTCCAcgttctttccttccaggtgcacctgttctgtcctcctctcctgtcattggttagtcattcattcacctagttcaaaccctctttgctacacagtatttaaacccctctgtttcctagcttCTTcgcgaagtcttgcattctctcccagatcaattctgagccttgtttcttgtttgcttaaccgtgtatttgaccttttgctaccctctctcgtttacccctttttggatctccctactagcctgttcgcctgatcgattgaccttggACTGTCCTTGTTAACTttctctcgttttgcccttatcggattatctgctccatatctaagcctgcacttggatcctttccttagGACGTCACAGAGACACAATGTGATTTTGGCATTCCATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185777 lncRNA downstream 21575 1820361 ~ 1829348 (-) True G147639
TU185695 lncRNA downstream 231856 1613333 ~ 1619067 (-) True G147588
TU185698 lncRNA downstream 231856 1616046 ~ 1619067 (-) False G147588
TU185696 lncRNA downstream 234976 1613333 ~ 1615947 (-) False G147588
TU185558 lncRNA downstream 661880 1188799 ~ 1189043 (-) True G147467
TU185827 lncRNA upstream 234979 2086358 ~ 2119964 (-) True G147681
TU185855 lncRNA upstream 449819 2301198 ~ 2364242 (-) True G147704
TU185874 lncRNA upstream 531635 2383014 ~ 2383214 (-) True G147722
TU185877 lncRNA upstream 552019 2403398 ~ 2403618 (-) True G147725
TU185941 lncRNA upstream 938908 2790287 ~ 2793329 (-) True G147782
AMCG00000063 mRNA downstream 114822 1723650 ~ 1736101 (-) True AMCG00000063
AMCG00000061 mRNA downstream 186076 1654325 ~ 1664847 (-) True AMCG00000061
AMCG00000060 mRNA downstream 208271 1619082 ~ 1642652 (-) True AMCG00000060
AMCG00000064 mRNA downstream 239712 1585546 ~ 1611211 (-) True AMCG00000064
AMCG00000059 mRNA downstream 306897 1489471 ~ 1544026 (-) True AMCG00000059
AMCG00000068 mRNA upstream 36871 1888250 ~ 1903755 (-) True AMCG00000068
AMCG00000069 mRNA upstream 501621 2353000 ~ 2354076 (-) True AMCG00000069
AMCG00000087 mRNA upstream 956315 2807694 ~ 2819520 (-) True AMCG00000087
AMCG00000100 mRNA upstream 1169038 3020417 ~ 3050033 (-) True AMCG00000100
AMCG00000095 mRNA upstream 1261740 3113119 ~ 3114141 (-) True AMCG00000095
TU185384 other downstream 1365340 484720 ~ 485583 (-) True G147324
TU185352 other downstream 1458441 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 1458788 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 3487430 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 4209943 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 4299341 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 4357895 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 4364377 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile