RNA id: TU186011


Basic Information

Item Value
RNA id TU186011
length 3223
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G147842
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3135920 ~ 3139189 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TtcatttagatttgtttattacaaagacttcaattgaataaaaaaaacatcctttcctaatataaatttgaaaaacaagaaaacaaataaaaagcttgCAGAATGACATTGTACAAAAtcATTCCGTAGtgtacaaaaatattttcaatccATCTATCCAATAATGACATGGAGCATTCCTCTGCATTTGTAAAGTACCTTAGCACATTACTTATGAGTTTCTTGAGTGTCTGTACATTCTTTATGTTCATGCTAAAAAGCTTTCCAAGCACATTCTCCAACTCCTCCTACAGGCCTCTGATGGCCAAGGGGACAACTTCAGCTTAATGGAGACTAATGATTCAGGGTTGCACCAGAAAGAAAGCATCCAAGGAACACTAACAGTTTATAGCTCAATAATTGTTTGGAGTATATAGAGCTTTTCAGGTTGCCCTTCTTCCAGTTACTGCCCCAAAATGGGTCATGCAACTTGACTTTACACAGGGCCCTTTAAGAGCAAACAGTAGGGTTTGTCCAATTCCCTCACAACCCCTCCATTCCTGTGTCTCAGGGCCCTCGCACAGATTCCAGTGTgtctgctccattttgtgctcaGTGTTGTGTCGCATACACACTGTTCTGTCCAGGCTTcttgaatgaatgaaaagtAATAATGCAGCATGTTCTGGTACGTGAAAAGAGATCTAGCcctggaatttaaataaatattgatttccaATGGACTATCTTCTTGAGTAATGTGTTTTaggagaaggaaaaataagtaattaaataaatactaatgaATAACTGGGGATGTAGGGAAGAGTTCAtccttattttgtttctttaatttaaaggaataataaaaacaatccagTGTTGAGACTTATTACTAATACACTACTTGTCAGTACACGTAGTTTGCTTGGGGACACAACTTGAAGtaactaacacacacacctcctattgtccattttaaatgctttaagaCTTTAAGACATTAACATTGTATTAACAGACATAAAAAGACAGCTTTATTTACAATAGTCTTAATTATCCAGTGTCATTAAAAAGAGGAAACCAGAGTGAAATGGTGCTCAGCTTCAGTTTCGGCCACAGAATGGGAAAGTAGGAAAGgctttcttaaaacaaataaagccagAGTTTTACTGGAACCAGGAATATGGGATACTAAGAAGGACTagcattaaatatgcattttcataaaaaGCTTTTGAAGTGAACCTGAAGGCCATCATTAACTTTCAGACCTAATACTCTTTTtccaaatattcaaatatccAAGACAGTCGGTATCTGCCAGGGGAAGAGCTCAAGTCTTTACCTGTTACTAACTGCCCACATTTCCAGAAAATCACTTGAAACTACTTGAAATATACAGCCGGACTTGAAGGAACACAATGCATGTGGGACTGTTTAGGAGGGTTGCTGGCCTCATTCGGGAGATCAAACGATAATCGTGCATTCAAAGGTTTACATTATGCTCAAAGAAGGGTCCCACTTTTCTGGCattgggtttctttttttgttttcacaatttcacaactTATCCATTCATGTGGTACATCAGTTACAGGACTAACCACCAGATCCAGAATTCAAATTctctacagaaaataataatcacatgcCTTCTTATTAATGAATTTGTTCCTGAAAGCATCTAGCCACAAATACAATAACGCCCCCTACATACACACCCATATATCTTTAACATTCAAGGTATTCAAGGCAAATCAAAGGTAGTGATGCCCAATCCCAGTTTAGAAGATGTAACTCGTGTAGCTGTGTTTGAAGACTAAACCAAAGCAGTGACGCCATTGAAGAAGTTCATCTTGGAGTCACCAATTTCCCACTGTAAAAAGCAGATGCTGGAAGAGGAAGAGCTGGGTGAGATTGCCTCAGTGACTTATCTGGAAATGTGTCACTGCGGTGCTGCAATATAGGCATGCCTCTGGATTTTGTTCTGAACTCTTAGAATGACGAGTGACTAAGCACACTATCACTGGAGTCCTAAGACAGGGACCAAGGTCTTACACTTACTCACCACACGTGCAGCTAGAAAAGCCCTAGCAGTGCTGGCCTGAAAACCTTCAGcatggaataaaaaataaaaaaaaaagactcccaGGACAGGCATAATGGTGTTtgtgtatacatgtttttttaaaagtatCACTTTACAGGTGggtccatttcatttttaatctcaCACACAGCCGTATTCATACCACACAGTCTGAGGGTCATTGCTGGGGTCTGGGGAGGCCGGGGTGCTCTTGGGAGCGCTGGAGTTGCTGCGGTTCAGGGTATCTTCAGCGTTGAGTCCGACCCCATCTCCTTCAGGCTGGGCTTGGGGCTTTGACAGGGACGTGTCTGCCGGTCTCGGCTCCCGggcctcttcctcctctttggGGATGGCCCTGACTGGTGTCACCATAGCCACCTCGCCACGGTGCTGGGTGGCGCTCCGGCCCTGTGGTGGCTGGGGCTGGGCTGACTTGGGTGGGCCGTACTGGGCAGAAGAGTAGTGCTGGGAGCCACCAGTGCCGTATCGCTCATGCAATGGGGTGTTGGTGACGAGGGAGAGGGCCGAGGAGTGGTGATGGGGTGGCTGCAGCTGGGGCTTCAGTGGCGAGAGGGGGCGGTCCTCTTTGGGAGGGGCGAGAGACAAACGCCGGGGGTCTAGAGGGCGGTAGGCAAGCTCTCCCTGGGAGGTGGACGCAGCCAGCCGGGCGGATTGCGGCCTCTCACGGGCCACTCCTCCTGGCCACCGCAGAACCACCCCGGGGCTCTGATCGGCGGCCAGCTTGGGGGAGCTCTCCTGGCAAAAGCTGTCGGGCCCATTGGAGCGGAGGAGGTCCGCAGACGCCAAGCTGAATGTGCGGCTTAGGCTGCTGCTGTTGCCTCTGAGGCCTGGCTGCTGGGAGGGCTGTTGGCTCAGCTTCTCAGAGGGCCGGGATGCGCTCACCAAACGGTTTGGTAACGTTTGAGTCTGCCAGGGGGAAAGCACAGAGTGGAGGCCAGGAGTCTCCGGAGGTCGGATGTTGGGTTTCACGCTATGCCCCGGTTTGGGGCCCCTGCTGTCCGTTAGGTCACTGGGAGCAGCTTTAACAGTTGGCATGACGTAGCTTGTGGGCATCTTGGCACCCTCTTTCAGAGCGGGCGGCTTGCCGACAGCAGGGGGGGGCTCGTTGACCTTCTTGAAGTAATCCGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185979 lncRNA upstream 99574 3035019 ~ 3036346 (+) True G147814
TU185974 lncRNA upstream 110131 3025378 ~ 3025789 (+) True G147809
TU185973 lncRNA upstream 112652 3022938 ~ 3023268 (+) True G147808
TU185972 lncRNA upstream 114349 3020395 ~ 3021571 (+) True G147807
TU185968 lncRNA upstream 119775 3010260 ~ 3016145 (+) True G147806
TU186027 lncRNA downstream 77595 3216784 ~ 3295868 (+) True G147856
TU186210 lncRNA downstream 491393 3630582 ~ 3631455 (+) True G147994
TU186231 lncRNA downstream 548774 3687963 ~ 3688231 (+) True G148010
TU186258 lncRNA downstream 589136 3728325 ~ 3759003 (+) True G148036
TU186304 lncRNA downstream 737182 3876371 ~ 3879521 (+) True G148075
AMCG00000075 mRNA upstream 28045 3076185 ~ 3107875 (+) True AMCG00000075
AMCG00000085 mRNA upstream 275736 2858153 ~ 2860184 (+) True AMCG00000085
AMCG00000088 mRNA upstream 294885 2839915 ~ 2841035 (+) True AMCG00000088
AMCG00000086 mRNA upstream 345433 2776667 ~ 2790487 (+) True AMCG00000086
AMCG00000074 mRNA upstream 527929 2572779 ~ 2607991 (+) True AMCG00000074
AMCG00000078 mRNA downstream 264170 3403359 ~ 3416557 (+) True AMCG00000078
AMCG00000079 mRNA downstream 304324 3443513 ~ 3464306 (+) True AMCG00000079
AMCG00000081 mRNA downstream 325174 3464363 ~ 3469964 (+) True AMCG00000081
AMCG00000082 mRNA downstream 384411 3523600 ~ 3536734 (+) True AMCG00000082
AMCG00000083 mRNA downstream 399499 3538688 ~ 3541156 (+) True AMCG00000083
TU185878 other upstream 731948 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 2018970 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 2637409 449652 ~ 498511 (+) True G147311
TU185240 other upstream 2888915 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 3070631 64746 ~ 65289 (+) False AMCG00000025
TU186234 other downstream 553920 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 581796 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 620990 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 2295969 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2741834 5881023 ~ 5888027 (+) True AMCG00000166

Expression Profile