RNA id: TU186232


Basic Information

Item Value
RNA id TU186232
length 269
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G148011
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3687963 ~ 3688231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTAACTACAGTGaaaacaggtccctctctaaacatgtAGCTAATCAAACATACAGACAATCAATACAATGGCAACTTATGTGAAGTAACTAAATAGCAGAGTATTAGCTAACATTAGCTCTCCTGCATTAGGATTGCACTAAATACGAGCAGTTGTGtcaaagtacataaataaatacaaacatcaaGACAAAAGTATTTCTAGGACAGACGTGAACATTTCAGAAAGGTTCTGAATTATTGCCCAAGCTCAAATGTGGAACAAAAAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186213 lncRNA downstream 45294 3642365 ~ 3642669 (-) True G147997
TU186193 lncRNA downstream 130126 3552159 ~ 3557837 (-) True AMCG00000084
TU186147 lncRNA downstream 224331 3463303 ~ 3463632 (-) True G147941
TU186125 lncRNA downstream 379162 3307169 ~ 3308801 (-) True G147921
TU185988 lncRNA downstream 673380 3010249 ~ 3014583 (-) True G147823
TU186263 lncRNA upstream 72071 3760302 ~ 3760617 (-) True G148041
TU186436 lncRNA upstream 542411 4230642 ~ 4231328 (-) True G148181
TU186460 lncRNA upstream 859593 4547824 ~ 4548060 (-) True G148198
TU186647 lncRNA upstream 1386199 5074430 ~ 5077246 (-) True AMCG00000161
TU186704 lncRNA upstream 1548637 5236868 ~ 5240683 (-) True G148364
AMCG00000084 mRNA downstream 129062 3554696 ~ 3558901 (-) False AMCG00000084
AMCG00000080 mRNA downstream 288310 3388190 ~ 3399653 (-) True AMCG00000080
AMCG00000076 mRNA downstream 360323 3308930 ~ 3327640 (-) True AMCG00000076
AMCG00000077 mRNA downstream 382703 3291179 ~ 3305260 (-) True AMCG00000077
AMCG00000097 mRNA downstream 400156 3268369 ~ 3287807 (-) True AMCG00000097
AMCG00000091 mRNA upstream 20152 3708383 ~ 3708970 (-) True AMCG00000091
AMCG00000092 mRNA upstream 38106 3726337 ~ 3735602 (-) True AMCG00000092
AMCG00000105 mRNA upstream 92752 3780983 ~ 3804361 (-) True AMCG00000105
AMCG00000107 mRNA upstream 188133 3876364 ~ 3897220 (-) True AMCG00000107
AMCG00000106 mRNA upstream 232364 3920595 ~ 3928012 (-) True AMCG00000106
TU185384 other downstream 3202380 484720 ~ 485583 (-) True G147324
TU185352 other downstream 3295481 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 3295828 387118 ~ 392135 (-) False AMCG00000037
TU186746 other upstream 1650578 5338809 ~ 5342491 (-) True G148395
TU186991 other upstream 2373091 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 2462489 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 2521043 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 2527525 6215756 ~ 6216441 (-) False AMCG00000190

Expression Profile