RNA id: TU186746


Basic Information

Item Value
RNA id TU186746
length 3683
RNA type TUCP
GC content 0.42
exon number 1
gene id G148395
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5338809 ~ 5342491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACCTTCATTAAAATTGGAATCGGTTTGGTCTTGCTGCCACAGCTAATCCCCATGATTAACAGAACACAACAATTACAAGGATTGAAATAGCATAAGATTAAAGGTTTGAAAATTGAGAACTGTTATTCTTATGTTGTGGTATTAGACAACATGCTGTTATGaggtgaaaaactaaattaaaatataaataaaatttcAACATTAAAGCACAGCTACACATACTTTACAGAAGCAGTCCAACCAAAACACAGATACCACATGGCTTTAACACACCATTAGTGTTTTTATCAACACAATGTATACAATTTGATCATTCTAATACTATAATACCGCAAAACGTATCTCTGTATACTTCAAATTCTGTTAACTTTCCTTAATATTTGGTAGACGTTTTACCCACACACAAACCATTCAACACTAATGTGCTGTCAAATTgtgctttcattttatatatatggtgatccactgctggatgaaggccttcccaatatgtttccacttgctttgatctacatcttttcttttccaggtcaGGCCTCCCCATCTTTCACATGGTTGTCTTCTGTGTCTTTTGTCATCTCCTATATATGTTAGAAATGGACACATTTAATATGgtctggacacactgcaagaacagatcaacgatggacaaaggaagccattgaatggataccaagaaaTGTTAAAAGATCTAGAAGACcaataaaagatggaaagatgatatccattcaatagcttctttcatctttgatctgttcttcttgcaatgtgtccggcccatatataatgtgtatataagagatgaaaaaagaccttgAAGATGACCACATCAAAGATGGGAGCTGTAGAtgaaagcaagtggaaacatatgagagaggccttcatccagcagtcaATATAGggtcatgatgatgatgatatatatacatatacagacataTGTTAACAAATAGAAATGatacatacaaaaatgcataatacaaAAGTGAATCTAATTCTGCATTGGTATAAGAGTGGGTCACAGACAGGATATCTTGATATCGTTCTTTGCACAGTGTTTATGTGGATTATGTCCTCTTGCTCAAACACCAAAACCTCCTTtcagccaaaaacaaaacatttgtatgaTCAAAATCATTCTTGATTGCTGAATTGCATTTGCTGGAATCAAATGCCACCTGAATCTGCTAATCAAGTTATAGCATGACAAAGATACCTCTATTTCTTCTAAGTAAGAGCTCAATGCCTGCTAAGTCCATGTTAAATGGTTCAAGCCAGTGATCtccagccctgctcctggagagtCCCACATTTGCATGCAGCaccacattttgttattatttcatacTAAGAAATTGGTTCAATCACTAGATTTGAGCGGAAACCAGACACTTGCTTAGGCCTCCTGGTTCAACGTTAGATTTAATTAGTATGGGTTGAAATGCATACTGAGTGCATGAGGCAAAGCTTTCGTCTATAAGCAAAAAGGGACGTTAAGAAGCCTGTATTTAGAAACCTGGTAAGCAAACCTGCCTGAAAGCTAAAATCATAGATAGAAGAGCTAGCAAGCCAAATACTTACTATTCATTTTCAACCCAGGACTCTGGTTTGAGAGAGCCCTTGTTTCTGAACTCTGAGCTATGTTGTGAGGCTGTTGGTAACCCACAAAGCACACCCAACACACATGCATCCTCATACACAGGAAGACAAAACCTTCATCGTgatacattcaaatatacaaataaaccaGAAACTTATAACAAAAccagaatataattaaaaaaaaaacactctcagcgtttaataaataaatatacacacccacacccacatatatatatatatatatatatatatatatatatatatatatgcacatacacagaatatatatatatacacaaatgtttaatacaaaacagtataatagataagtacagtttcctttgcttttaatttgttacaGGCCCCTTTGCCCCTGTTTTGCATGGTGGCATTTGAGACATCAGGATGCTGCCAGCATTGACGGCATACTACAATGCGTGCCTGTACAGCTACCAGCCTGATAGCACATTTCGTCACAAAGGGCTCTTGACTTCATAAGGAATACCTGGTGAAACAGTCCTGCCTAGGAATCTAATAGAACAGCTCAGGGATCAACGTGACCCATCAGTCAGATAGAGATGACAGAGACCAATGCTCTCAATGAACTAGACATTGCACTGGGAGGAATGGCACAGAATTGGCATCTGGAGGACGGCAGTAGTCGTTTAGGCCCAACTTATTGCAGACACCGTCAAAAGCTTAATACTACTATTAAGTATTACTTAATACTTTTGgtaaatatgcatacatatacacatacacatgcacacatgtattttaattcactAATTTAGAGAGGAGCACTAGTCTGTACAAATCAACACCAGATTTTCTTCCTTTGTCCCTTTTTCTATCCATGAACAGTTCAGAAAAACTACTCCAGAGAAGATACAAAATACTTTCAGAAcggaaaaaatgctgtataagAGTCTCCAAAGACGAGGCCTGTAGAGAGGAAACCACTAAGGTCTTGCAGCATTCACACTTAGTGGAACATGGTTTGTCAACAGCAGATATCGTCTTGCAGAAAAGACAAGACATATTATATCCTGATGCAGCGCAAGCTcaggtgttgttgttgtcccgCATGGGGGTGGAGTCGGACGAGTTTTTGGAGTTCTGCAATTTTGGCAGGCTGCTGTCCGTGCCCTTGTGCTGCAAAGAGGTCCGGCTCCGAAAGCTGATCAGGCTGCGGCGGATCTCCTTGCGAATGTTGTCGCTGGCCAGCACGTAGAGAATAGGGTTCATGGCGCTGTTGAAGGTGGACAGTCCCAGGGAGATGGTGTAGGGGGTGTACACGTAGTCCTCAAAGACACAGTTTTTCAGGTTGAAGTGAAACATGATTGCCCGGAGCAAGAGGATCATGTGGTAAGGGGCGAAACACACCAAGAACAAGAGTATGACAGCGATGGCCAAGTACTTCACTTTCACCTTCTGCTCCCTGCGCAGCCCCGTGCTGGCCTGAATGTTGACGAAGATGGAGCGGTTGGTGACCACTAAGATTACAAAGGGAATGAAGAAGCCGATGAAGAAGCGGGCGTAGTTGAAGCCTGTCACCATGGCTGTGTTCTGCCCGGGCTCGAAACACAGTTTCTGCGTCCCTTCCGTATTGCCCTCTTTCATTATGAAAACGGGGACATGGCCCACTGCCACCAGCACACACAGGGCGCAGGTGATGATGCCCGCCAGCTTCTGTTTCCTCAAGCCCCGGGACTCCACGGCGTACACCACAGCAACATAGCGGTCGATGGAGACACAGCAGAGGAGGAAGATGCTGATGTACATGTTGTTGAAGAACACGTAGCCAGTCAGCTTGCAGGCCATGGAGCCCCACAGCCACTCGTGGCCCATGTTGATGTAGATGGTCCACAGTGGCAGGGTACAGAGATACATGAGGTCGCACAGGGACAGGCTCAGCAGGTAGATCCCCAGCACATTCTTCCTTAGCACTTGCAGGAAGGTCATGTAAACTGTGGCCAAGTTGGCCGGGAGGCCGATGATGATCACGATGCTGTAGAGGACAACAAGGGGGATGCGGTCCTCAGAGTAAGGGGGGGTACAGGTGCTGTTGTCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186704 lncRNA downstream 98126 5236868 ~ 5240683 (-) True G148364
TU186647 lncRNA downstream 261563 5074430 ~ 5077246 (-) True AMCG00000161
TU186460 lncRNA downstream 790749 4547824 ~ 4548060 (-) True G148198
TU186436 lncRNA downstream 1107481 4230642 ~ 4231328 (-) True G148181
TU186263 lncRNA downstream 1578192 3760302 ~ 3760617 (-) True G148041
TU186757 lncRNA upstream 35258 5377749 ~ 5380128 (-) True G148400
TU186775 lncRNA upstream 108509 5451000 ~ 5454248 (-) True G148416
TU186776 lncRNA upstream 112755 5455246 ~ 5455489 (-) True G148417
TU186854 lncRNA upstream 368528 5711019 ~ 5711876 (-) True G148486
TU186961 lncRNA upstream 661695 6004186 ~ 6012637 (-) False AMCG00000180
AMCG00000151 mRNA downstream 19280 5312483 ~ 5319529 (-) True AMCG00000151
AMCG00000149 mRNA downstream 32729 5293188 ~ 5306080 (-) True AMCG00000149
AMCG00000150 mRNA downstream 53377 5274675 ~ 5285432 (-) True AMCG00000150
AMCG00000140 mRNA downstream 82421 5243028 ~ 5256388 (-) True AMCG00000140
AMCG00000138 mRNA downstream 163690 5159727 ~ 5175119 (-) True AMCG00000138
AMCG00000144 mRNA upstream 55896 5398387 ~ 5407241 (-) True AMCG00000144
AMCG00000158 mRNA upstream 129670 5472161 ~ 5516402 (-) True AMCG00000158
AMCG00000156 mRNA upstream 178964 5521455 ~ 5528826 (-) True AMCG00000156
AMCG00000157 mRNA upstream 202338 5544829 ~ 5573070 (-) True AMCG00000157
AMCG00000154 mRNA upstream 243456 5585947 ~ 5620822 (-) True AMCG00000154
TU185384 other downstream 4853226 484720 ~ 485583 (-) True G147324
TU185352 other downstream 4946327 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 4946674 387118 ~ 392135 (-) False AMCG00000037
TU186991 other upstream 718831 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 808229 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 866783 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 873265 6215756 ~ 6216441 (-) False AMCG00000190
TU187117 other upstream 1215351 6557842 ~ 6563305 (-) False G148692

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035484 True 1726 mRNA 0.48 2 NC_007131.7 18345518 ~ 18351510 (-)
grasscarp (Ctenopharyngodon idella) CI01000051_00750280_00751344.mRNA True 3686 mRNA 0.42 1 CI01000051 750158 ~ 753843 (+)