RNA id: TU186757


Basic Information

Item Value
RNA id TU186757
length 2347
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G148400
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5377749 ~ 5380128 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCATTCATTTCTAAAGTACCCATCAAATAACTGAAGACACGACGTATGCAATATTTTGTaccttttattaaaaattatttacaaaaatgctacaatgtattttattcaaatataaaaaaatgcatacagtCTACCATAGGTTTAGGTATTAAATGTCAATGTGTACTCGATTAAACTGAACTGCACTGCCTTCAAATAGGGAAGGAGGTGTGAGGACTACTTCTATAATACTGGCTGTGTTCATACATAATGTTGCCTGAGTAATCTCTTAGCCATGATACAGAACAATCTTCCGTACAATCTCTTTAAAAGAagaccattttattttgtaagacaACTGCTCAGTAAACCAtacttttaaaactgaatacCTTTATATGAACCAGTTAGATGAACCATGCCCCTCagattttaaatactgtttgaATGTTACTGATCTGTGGTAACTAAAAATGCATAGTATATGGAAAGTGCCACCACTTGAGATTACAGGAAATGGTATGAAGTTcatagtttaaaacaaacaaacaaaaaaggaagtaTTTTGAAAGCCAACTCCACTTTGAATTCCACCAAACTCAAAATTCATTCTGACATGcttgcatttaataaataaaaaaataaattagaactCAAATAACTTAAAACTGGGTCTGACCCATAATTCTTCATttgtaacaatacaaatatcagAACATATGGCTTCGAACAGCAAAAGCAGGAGCAAGTTGTATGTATTTCCGCCATTTCCGCAATCATTCAGGAGCGTGTCCTGCTTGGTATGTCTTATCAGATACAGGTTGTGCATTTTGCCTAagcacaaatataaaataaggtgCCTTTCACCATTTCTACACTGTTtggaattttaaaatacatttctctcctCTTCGAGCACATATTGCATTCAGGTATCAAagtcaaaggaagacatctttCCACATAGATTTACCAATTTTCTTCTGATAGTTCTctcaggttaaaaaaaaaaataatctaaaagtACTGTAACATTTTCCAAGCAGTATgtgttgtaaaaatatatatttatatatttatatatttttttaaatcttttttttttctttttttttttttttttaggaaaatatGTGTAGCTTTAGAAGTTCCGATACATAACTTGTTTTGTTCACAATTATGTAGTGTAATGACATCATTTTAGAGTAAAtgtcacaataaattaaaaaaaagaaaaaaaaagaaatgaaaaaacataaccCACAtatagaaaacatacaaaagtatgtaaataaaattacaatggCAGGCACGTCAAATCACAGCCCAGAAAAAACATTATCATGTTAATTAAGAGCTCATGATTTCACTTACCTAccatatacgtgtgtgtgtgttcatagcCACACATAGACACTGACATACGTAcagtttatacaaaaaaaaacaagtcttgtCTAGGAGCCTACAATGATCTCCATAATGTGATCTAGTTCGTTGAGATCTGGTCGGCAGCTCGAGTTGGAGCCGATTGAAGACGGACTGTGAGATGACAAACTCTCCAGTAAGTCATAGGGCCCCATTTTGGGGGCGCTCTGCATTCCAGTCAACATGGTGTCCAGGTCATAATAGGAGGCGTCAACGTCTGAAAAGAGCTCCTCAAGGGCGGGGTCAGGACTGGGGGCAGGGTTCTTGATTTCAAAAGTGCCGAAGACTTGCTCCGTGGGCTTGgagtcctcctcctcctcctcgtcctcatcttcttcctcctcctcctcctcctcctcttcttcttcttcttcctcttcttcctcctcctcctcgtcgtcctcctcctcatcctcctcctcctcgtcctcacAGCTCTCCTTGGTATCATCCTTCTCCCAGGCACCAATGGGGCTGGGTAGGTACGCCGAGGCGGCCTCCGAGGACACCGCACACAAGGTGTCGTCCACCACCTCTTCCGAGTGGCAACCGATGGAGTGGCAGGCCTCGTAGCTGATGACGTTGAAGGACTTCTCCTCGTCCGGCTCCTTGGGCGACGGCCGGCAGAGGATCTCCGTGGCCACCAGGCGGTCGGCCGAGTTCTGGTTGGCGTTCAGGGCCTCCGTCATGATCTGCCAGCTGCCGTCCTGCGTCATCTCCTCCTGGATCTGCCGGACCGTGTTGGCGATGAGGACGGACCGGCACAAGTTAGGCTCCACCAGCATGTGACACAGCTGCAGCTTTATCAAGGACATGTCCAGCAGGGACTGGCGCTGGAGGTTGTACGAAGACATCACTTTAATATTTGCGGGACTCTCTTCCACCATCTCGTCCCCGTCAGAGAATTTACGTTTTGTGCCCTTTGGAAACATTTTGTcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186748 lncRNA downstream 35258 5340755 ~ 5342491 (-) False G148395
TU186704 lncRNA downstream 137066 5236868 ~ 5240683 (-) True G148364
TU186647 lncRNA downstream 300503 5074430 ~ 5077246 (-) True AMCG00000161
TU186460 lncRNA downstream 829689 4547824 ~ 4548060 (-) True G148198
TU186436 lncRNA downstream 1146421 4230642 ~ 4231328 (-) True G148181
TU186775 lncRNA upstream 70872 5451000 ~ 5454248 (-) True G148416
TU186776 lncRNA upstream 75118 5455246 ~ 5455489 (-) True G148417
TU186854 lncRNA upstream 330891 5711019 ~ 5711876 (-) True G148486
TU186961 lncRNA upstream 624058 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA upstream 624058 6004186 ~ 6012637 (-) True AMCG00000180
AMCG00000151 mRNA downstream 58220 5312483 ~ 5319529 (-) True AMCG00000151
AMCG00000149 mRNA downstream 71669 5293188 ~ 5306080 (-) True AMCG00000149
AMCG00000150 mRNA downstream 92317 5274675 ~ 5285432 (-) True AMCG00000150
AMCG00000140 mRNA downstream 121361 5243028 ~ 5256388 (-) True AMCG00000140
AMCG00000138 mRNA downstream 202630 5159727 ~ 5175119 (-) True AMCG00000138
AMCG00000144 mRNA upstream 18259 5398387 ~ 5407241 (-) True AMCG00000144
AMCG00000158 mRNA upstream 92033 5472161 ~ 5516402 (-) True AMCG00000158
AMCG00000156 mRNA upstream 141327 5521455 ~ 5528826 (-) True AMCG00000156
AMCG00000157 mRNA upstream 164701 5544829 ~ 5573070 (-) True AMCG00000157
AMCG00000154 mRNA upstream 205819 5585947 ~ 5620822 (-) True AMCG00000154
TU186746 other downstream 35258 5338809 ~ 5342491 (-) True G148395
TU185384 other downstream 4892166 484720 ~ 485583 (-) True G147324
TU185352 other downstream 4985267 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 4985614 387118 ~ 392135 (-) False AMCG00000037
TU186991 other upstream 681194 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 770592 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 829146 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 835628 6215756 ~ 6216441 (-) False AMCG00000190
TU187117 other upstream 1177714 6557842 ~ 6563305 (-) False G148692

Expression Profile