RNA id: TU186854


Basic Information

Item Value
RNA id TU186854
length 858
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G148486
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5711019 ~ 5711876 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTACCttaaaaatttgaaataaaacagtaaaacatatgATAGAGGCATATGAAATACCCAggagaacattattattattattttattattattatttatttcttagcagacacccttgtccagggtgacttacaaaacacaagagcaatactaattgcaataatacagtgcaattcaaggcataatacattttaccaattccaatttacacaagtgtatatgagatatacagtaaacaatatataaggtcttacatcctagattgtaaaagctgataagtgcagacaacattttaagtcaaagttaagagctaagggaaagggaacATAGGGGTAATCAAAATAAGCAATACCAGTGCTAGTAAAGCATGGCAAGTAGTAAGACAAAacgtataagtgctatcttacaagAGAGTAATGGTAAGCATGGTAAGCATAATAATGAAATTTCTTAATATAGTGGCTTTTACACCGCATTGACTTTTGTCAAAAAACTACTTCACGAAAATGAAACACATTCTCATGTATACACTGCCCTCTACTTTCAGGAAACCAACTTGTAAAACCATTAGTGgtcacagacacaaataaatacatagttgtGTTGATTTATCTTTGAAATATTTCCTTGGTTAAccacaaatttatttttaaatgtattaaaagaaagCAGTTTAATGCTCATAGAGTGAATATACTTTTAATACAGCCAATACTGATTGCTAATTAAGCCCCAGGGTCCCTGTACTGTTAACACATGCCCTAAGactcctgtatttatttacgtGTTAATAAAGGTCTTATATCCCATGTATTGCTTGAGAGcagcattatttttattggttGCTGTCCAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186776 lncRNA downstream 255530 5455246 ~ 5455489 (-) True G148417
TU186775 lncRNA downstream 256771 5451000 ~ 5454248 (-) True G148416
TU186757 lncRNA downstream 330891 5377749 ~ 5380128 (-) True G148400
TU186748 lncRNA downstream 368528 5340755 ~ 5342491 (-) False G148395
TU186704 lncRNA downstream 470336 5236868 ~ 5240683 (-) True G148364
TU186961 lncRNA upstream 292310 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA upstream 292310 6004186 ~ 6012637 (-) True AMCG00000180
TU187002 lncRNA upstream 436053 6147929 ~ 6148286 (-) True G148610
TU187110 lncRNA upstream 844829 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 845966 6557842 ~ 6563305 (-) True G148692
AMCG00000162 mRNA downstream 1416 5695755 ~ 5709603 (-) True AMCG00000162
AMCG00000153 mRNA downstream 51064 5658183 ~ 5659955 (-) True AMCG00000153
AMCG00000154 mRNA downstream 90197 5585947 ~ 5620822 (-) True AMCG00000154
AMCG00000157 mRNA downstream 137949 5544829 ~ 5573070 (-) True AMCG00000157
AMCG00000156 mRNA downstream 182193 5521455 ~ 5528826 (-) True AMCG00000156
AMCG00000163 mRNA upstream 2994 5714870 ~ 5742038 (-) True AMCG00000163
AMCG00000171 mRNA upstream 55662 5767538 ~ 5791438 (-) True AMCG00000171
AMCG00000172 mRNA upstream 79707 5791583 ~ 5822126 (-) True AMCG00000172
AMCG00000167 mRNA upstream 259904 5971780 ~ 5984573 (-) True AMCG00000167
AMCG00000178 mRNA upstream 280597 5992473 ~ 6000662 (-) True AMCG00000178
TU186746 other downstream 368528 5338809 ~ 5342491 (-) True G148395
TU185384 other downstream 5225436 484720 ~ 485583 (-) True G147324
TU185352 other downstream 5318537 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 5318884 387118 ~ 392135 (-) False AMCG00000037
TU186991 other upstream 349446 6061322 ~ 6067184 (-) False AMCG00000177
TU187005 other upstream 438844 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 497398 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 503880 6215756 ~ 6216441 (-) False AMCG00000190
TU187117 other upstream 845966 6557842 ~ 6563305 (-) False G148692

Expression Profile