RNA id: TU187002


Basic Information

Item Value
RNA id TU187002
length 358
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G148610
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 6147929 ~ 6148286 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatgtataacttttttgaaatgcatttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttccctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186961 lncRNA downstream 135292 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 135292 6004186 ~ 6012637 (-) True AMCG00000180
TU186854 lncRNA downstream 436053 5711019 ~ 5711876 (-) True G148486
TU186776 lncRNA downstream 692440 5455246 ~ 5455489 (-) True G148417
TU186775 lncRNA downstream 693681 5451000 ~ 5454248 (-) True G148416
TU187110 lncRNA upstream 408419 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA upstream 409556 6557842 ~ 6563305 (-) True G148692
TU187241 lncRNA upstream 992076 7140362 ~ 7140968 (-) True G148801
TU187436 lncRNA upstream 1610396 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 1807686 7955972 ~ 7956264 (-) True G149002
AMCG00000169 mRNA downstream 21569 6125794 ~ 6126360 (-) True AMCG00000169
AMCG00000179 mRNA downstream 78097 6067655 ~ 6069832 (-) True AMCG00000179
AMCG00000177 mRNA downstream 80756 6045665 ~ 6067173 (-) True AMCG00000177
AMCG00000176 mRNA downstream 118133 6017546 ~ 6029796 (-) True AMCG00000176
AMCG00000180 mRNA downstream 135310 6010416 ~ 6012619 (-) False AMCG00000180
AMCG00000168 mRNA upstream 2437 6150723 ~ 6154301 (-) True AMCG00000168
AMCG00000189 mRNA upstream 59228 6207514 ~ 6209577 (-) True AMCG00000189
AMCG00000190 mRNA upstream 65719 6214005 ~ 6216062 (-) True AMCG00000190
AMCG00000188 mRNA upstream 96433 6244719 ~ 6258200 (-) True AMCG00000188
AMCG00000187 mRNA upstream 112334 6260620 ~ 6279544 (-) True AMCG00000187
TU186991 other downstream 80745 6061322 ~ 6067184 (-) False AMCG00000177
TU186746 other downstream 805438 5338809 ~ 5342491 (-) True G148395
TU185384 other downstream 5662346 484720 ~ 485583 (-) True G147324
TU185352 other downstream 5755447 387118 ~ 392482 (-) True AMCG00000037
TU185350 other downstream 5755794 387118 ~ 392135 (-) False AMCG00000037
TU187005 other upstream 2434 6150720 ~ 6154266 (-) False AMCG00000168
TU187023 other upstream 60988 6209274 ~ 6209957 (-) False AMCG00000189
TU187026 other upstream 67470 6215756 ~ 6216441 (-) False AMCG00000190
TU187117 other upstream 409556 6557842 ~ 6563305 (-) False G148692
TU187112 other upstream 410540 6558826 ~ 6563305 (-) False G148692

Expression Profile