RNA id: TU187241


Basic Information

Item Value
RNA id TU187241
length 607
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G148801
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7140362 ~ 7140968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tGACATTTACAGAACGGAGTCCAAGTGAAGATTAATAAACATCTGGTTTGGCAGGCAAACTGCCTCGGAGGAAGGGAAGTTAAGAGAATGACTGTTTTCTGACCCTTCACATTGCAGAAATAAAAGATCAACTGCTACCAGAACTAGTGGTACAAAATTCCATGTGATTTCCCAAGTGCATGTTTGCAAGCAAGTTGGAGAGGGGATGGGGAccctttttttctatttaaccCAGgtgaagttattttaaaaagttagtGTGCAAGAGACTTGTTACTAGACCAATCAAATAATTGACCTACCTGTACGTCACAGAATACAAAactttgatttataagtagtagaaattGTCTTCTGACAGTACATAAATCTGCAAGAGGGTACAGTTTTATACTTTGTGATTTTTCAAATAggtttaagttttaatttgctCTAGCCCTGTAAGAGAACCTTTTAAGTAATCTAAAAACTCCTTTTGGACTTTTTCTaagaaatattcaaatatcTGTGGGTTTGGCAATACATTCATTATTGGATACAATGTTtatgaaatgcaatttaacaaGCAGAagaagatttaaatatattcttgtCAGCTGACATGGGA

Function

GO:

id name namespace
GO:0046036 CTP metabolic process biological_process
GO:0046131 pyrimidine ribonucleoside metabolic process biological_process
GO:0046132 pyrimidine ribonucleoside biosynthetic process biological_process
GO:0046134 pyrimidine nucleoside biosynthetic process biological_process
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process biological_process
GO:0072528 pyrimidine-containing compound biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process biological_process
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process biological_process
GO:0009218 pyrimidine ribonucleotide metabolic process biological_process
GO:0009220 pyrimidine ribonucleotide biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187110 lncRNA downstream 577057 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 577057 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 992076 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 1127725 6004186 ~ 6012637 (-) False AMCG00000180
TU186962 lncRNA downstream 1127725 6004186 ~ 6012637 (-) True AMCG00000180
TU187436 lncRNA upstream 617714 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 815004 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 1162851 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 1388099 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 1432114 8573082 ~ 8575086 (-) True G149075
AMCG00000193 mRNA downstream 205175 6927997 ~ 6935187 (-) True AMCG00000193
AMCG00000194 mRNA downstream 213197 6923416 ~ 6927165 (-) True AMCG00000194
AMCG00000192 mRNA downstream 218686 6916674 ~ 6921676 (-) True AMCG00000192
AMCG00000210 mRNA downstream 278934 6859006 ~ 6861428 (-) True AMCG00000210
AMCG00000206 mRNA downstream 468413 6670213 ~ 6671949 (-) True AMCG00000206
AMCG00000230 mRNA upstream 71563 7212531 ~ 7225374 (-) True AMCG00000230
AMCG00000229 mRNA upstream 98796 7239764 ~ 7249352 (-) True AMCG00000229
AMCG00000231 mRNA upstream 120638 7261606 ~ 7268243 (-) True AMCG00000231
AMCG00000218 mRNA upstream 155861 7296829 ~ 7303937 (-) True AMCG00000218
AMCG00000219 mRNA upstream 184976 7325944 ~ 7336883 (-) True AMCG00000219
TU187117 other downstream 577057 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 577057 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 923921 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 930405 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 986096 6150720 ~ 6154266 (-) False AMCG00000168
TU187302 other upstream 220254 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 954997 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1894589 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 2346911 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 2399643 9540611 ~ 9541259 (-) True G149341

Expression Profile