RNA id: TU187523


Basic Information

Item Value
RNA id TU187523
length 397
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G149030
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8303819 ~ 8304215 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCATGTAAGACGATTAACCAAGGCTCTCTTCTGCTGTCGGAGGGCACGTGGTTTTGGTTTGTGGCTGTAAAATCAGATATCACTTTTCCTTGTAAAAATCTCAAACCCCCAGCTTAAGAAATTGTGtcaacaaaaaaggaaaggatcTTGCTTCAAATAAAACCCAGCTGTCTTGAGCTTCATTACTGGTATGATTCTTGTagggtgtttttctttttcggACAACATCTTTGAGGGACTCGGTCGGAGAAAACATCCTTTCATTTACACAGGATTCCAAACGCAGACCATCAAACAGGGTTTTGAACGAGCACTAAAAAGAACTGCCGCAAAGTGACGCTGGAGAAGGAGAGACCCAGGAGTGGCACATCTGGATTATCATTCCTGGACAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187485 lncRNA downstream 347555 7955972 ~ 7956264 (-) True G149002
TU187436 lncRNA downstream 544856 7758682 ~ 7758963 (-) True G148962
TU187241 lncRNA downstream 1162851 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 1740514 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 1740514 6557842 ~ 6563305 (-) True G148692
TU187566 lncRNA upstream 224852 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 268867 8573082 ~ 8575086 (-) True G149075
TU187575 lncRNA upstream 364801 8669016 ~ 8739984 (-) True G149077
TU187585 lncRNA upstream 439656 8743871 ~ 8744499 (-) True G149087
TU187631 lncRNA upstream 547101 8851316 ~ 8851779 (-) True G149125
AMCG00000240 mRNA downstream 389387 7898317 ~ 7914432 (-) True AMCG00000240
AMCG00000239 mRNA downstream 411669 7886490 ~ 7892150 (-) True AMCG00000239
AMCG00000226 mRNA downstream 456475 7841415 ~ 7847344 (-) True AMCG00000226
AMCG00000224 mRNA downstream 535559 7760630 ~ 7768260 (-) True AMCG00000224
AMCG00000225 mRNA downstream 550253 7746823 ~ 7753566 (-) True AMCG00000225
AMCG00000253 mRNA upstream 364686 8668901 ~ 8687083 (-) True AMCG00000253
AMCG00000254 mRNA upstream 425070 8729285 ~ 8734548 (-) True AMCG00000254
AMCG00000242 mRNA upstream 447462 8751677 ~ 8771216 (-) True AMCG00000242
AMCG00000243 mRNA upstream 483890 8788105 ~ 8814916 (-) True AMCG00000243
AMCG00000241 mRNA upstream 549004 8853219 ~ 8863951 (-) True AMCG00000241
TU187495 other downstream 196980 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 941127 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 1740514 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 1740514 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 2087378 6215756 ~ 6216441 (-) False AMCG00000190
TU187735 other upstream 731342 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 1183664 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 1236396 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 1452166 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 1527540 9831755 ~ 9832133 (-) True G149402

Expression Profile