RNA id: TU187573


Basic Information

Item Value
RNA id TU187573
length 713
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G149075
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8573082 ~ 8575086 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTTATCAgagaaaaactgtttatttaattttagtcaCAATGGTGCATCTGTGGTGATCACCACCCACGCTCTATTATACAGGTTAACACAAGATTAAACATCATGCAAAGTAAACTATCACACATACACctgtgtgttactgtttttaacatttaatgtcagccatgtatatataaaaaaagattaataatggGTGGTGGAAATAACTTGGTTCCAAGGAGCACGACTGCGCTCGCACCTGGTATAAAAAAGGACAGGAAGCATGTTGAAGTGTGTGTCTCGTCAGCTCAGAGTCTCTTCCGTGTAATCGTAAGTTTGGTGAAAAGACATTCTTGATGGAAGTGGTTGTGGCTCTCGCTGGCAGTGGCTTGAAGGTCCTTTAGCACAGAGACTTCCCCGACTTCACGTTCTGGGCACAGGTCCGGGCCAGGTTCACTCCTTGGAGGAAGAGGTCAGTGAACTGATCCAGTCCAACACAGGTCGTTAACGGAGAAACAAATCCATACAAGCCCCCGAGGAAAATGCTGATAGGCCAGGCGAGGAAAATCAATATAAGGAGCCAGAATATGGACCACAAGATACACCCACAATCAGCCATGTTTGAGCCCGTAGCCGACTTCAACTTCGAAGCAGTTTCTTTAGGCTGGACTGGCTGCTGGGTCACCGTCGAGCTAAATATTTCCTGCTCTGGGTTGCTAAGCGAGTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187523 lncRNA downstream 268867 8303819 ~ 8304215 (-) True G149030
TU187485 lncRNA downstream 616818 7955972 ~ 7956264 (-) True G149002
TU187436 lncRNA downstream 814119 7758682 ~ 7758963 (-) True G148962
TU187241 lncRNA downstream 1432114 7140362 ~ 7140968 (-) True G148801
TU187113 lncRNA downstream 2009777 6557842 ~ 6563305 (-) True G148692
TU187575 lncRNA upstream 93930 8669016 ~ 8739984 (-) True G149077
TU187585 lncRNA upstream 168785 8743871 ~ 8744499 (-) True G149087
TU187631 lncRNA upstream 276230 8851316 ~ 8851779 (-) True G149125
TU187643 lncRNA upstream 307562 8882648 ~ 8945588 (-) True G149132
TU187772 lncRNA upstream 594997 9170083 ~ 9188266 (-) True AMCG00000270
AMCG00000240 mRNA downstream 658650 7898317 ~ 7914432 (-) True AMCG00000240
AMCG00000239 mRNA downstream 680932 7886490 ~ 7892150 (-) True AMCG00000239
AMCG00000226 mRNA downstream 725738 7841415 ~ 7847344 (-) True AMCG00000226
AMCG00000224 mRNA downstream 804822 7760630 ~ 7768260 (-) True AMCG00000224
AMCG00000225 mRNA downstream 819516 7746823 ~ 7753566 (-) True AMCG00000225
AMCG00000253 mRNA upstream 93815 8668901 ~ 8687083 (-) True AMCG00000253
AMCG00000254 mRNA upstream 154199 8729285 ~ 8734548 (-) True AMCG00000254
AMCG00000242 mRNA upstream 176591 8751677 ~ 8771216 (-) True AMCG00000242
AMCG00000243 mRNA upstream 213019 8788105 ~ 8814916 (-) True AMCG00000243
AMCG00000241 mRNA upstream 278133 8853219 ~ 8863951 (-) True AMCG00000241
TU187495 other downstream 466243 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1210390 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2009777 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 2009777 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 2356641 6215756 ~ 6216441 (-) False AMCG00000190
TU187735 other upstream 460471 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 912793 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 965525 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 1181295 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 1256669 9831755 ~ 9832133 (-) True G149402

Expression Profile