RNA id: TU187585


Basic Information

Item Value
RNA id TU187585
length 629
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G149087
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8743871 ~ 8744499 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTGAGGCACCCCATCACGGAGGGCCagcggggcatccacacccaaggtctgacaagccatcgccacccaaaggctgttgatggtccaacccccccacccccgatggccgtcgagaggcctcctccagagggaagagcacagccagcagcaccgatcaagaactttctgatctccttgctgctctaacaactatactgcctggaggggaggagaccattaggcctaggccctaagccgtggacccccagagattcattttcatCTATAggagattttttgtttttctctcctccgtgcctaaatggtttatttatttaaatgttcacttattattattattttagatcatgtaaactgtttacaggtctatatttatttattttactttattgtatttatgttttttattttgctgtactttgtatgttttcaagtctgtaaagcgctctgtggctaccctgcgaagggcactatacagatcaaaattgattgattgatgctTAGTGTGCTATTGCATTTGTTCAGCAAGTGTTTGTTAAACAGCTTGAAATGTACTTATTGGAGCCTCTGAGAATAAAGTATGTGAactaaaagtaatacaatatcTACATATCGACTTTATTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187575 lncRNA downstream 3887 8669016 ~ 8739984 (-) True G149077
TU187566 lncRNA downstream 160415 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA downstream 168785 8573082 ~ 8575086 (-) True G149075
TU187523 lncRNA downstream 439656 8303819 ~ 8304215 (-) True G149030
TU187485 lncRNA downstream 787607 7955972 ~ 7956264 (-) True G149002
TU187631 lncRNA upstream 106817 8851316 ~ 8851779 (-) True G149125
TU187643 lncRNA upstream 138149 8882648 ~ 8945588 (-) True G149132
TU187772 lncRNA upstream 425584 9170083 ~ 9188266 (-) True AMCG00000270
TU187809 lncRNA upstream 616833 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 745770 9490269 ~ 9490806 (-) True G149322
AMCG00000254 mRNA downstream 9323 8729285 ~ 8734548 (-) True AMCG00000254
AMCG00000253 mRNA downstream 56788 8668901 ~ 8687083 (-) True AMCG00000253
AMCG00000240 mRNA downstream 829439 7898317 ~ 7914432 (-) True AMCG00000240
AMCG00000239 mRNA downstream 851721 7886490 ~ 7892150 (-) True AMCG00000239
AMCG00000226 mRNA downstream 896527 7841415 ~ 7847344 (-) True AMCG00000226
AMCG00000242 mRNA upstream 7178 8751677 ~ 8771216 (-) True AMCG00000242
AMCG00000243 mRNA upstream 43606 8788105 ~ 8814916 (-) True AMCG00000243
AMCG00000241 mRNA upstream 108720 8853219 ~ 8863951 (-) True AMCG00000241
AMCG00000257 mRNA upstream 202164 8946663 ~ 8961375 (-) True AMCG00000257
AMCG00000265 mRNA upstream 218469 8962968 ~ 8977588 (-) True AMCG00000265
TU187495 other downstream 637032 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1381179 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2180566 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 2180566 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 2527430 6215756 ~ 6216441 (-) False AMCG00000190
TU187735 other upstream 291058 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 743380 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 796112 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 1011882 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 1087256 9831755 ~ 9832133 (-) True G149402

Expression Profile