RNA id: TU187889


Basic Information

Item Value
RNA id TU187889
length 538
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G149322
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9490269 ~ 9490806 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAATTGGGCTACATTTGGAAACTCCCAGGTTTCATAATATAGTTTAATCAGTTGAAGGGCTCCTACTGTTTACTGATAAAGCATCCATCACAGAAGGCTTTTTGAGATGTTAGGGTAAATTCTTTCACACATTAACAAAGAAAGGCAAACATGTTTAACTTGACTTAGCTATACTATGGACTTAATGTCCATTAAGGCTTTTGTACACTTAGAAGGAACTTAAGAGTTTTACAGTAACAGAAACAAACCTTTACCTTCAGCATCCTGATTTCCCTCAGTGCAATCTTCTTTATTATCGGATCATCTTCGGACTCCACAAACTTCTTAATGGCCACGATCTGCCCTGACTCTTTGTTTTTGCACTTGAACACAACTCCGTAGGAGCCCTCCCCGATTTTACCGATTTTCTCATACTTCTCCATCCTGGTACAGGATGAATAGGGGTTCAGGGGCATCAAAAAGCCTTCCCTTGCTCTTCCAATCCTGCCCTGACCACTGCTACAAAGGGGAGGGAAGGAAAGACTCCCGTTTCAacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187809 lncRNA downstream 126834 9361332 ~ 9363435 (-) True G149268
TU187772 lncRNA downstream 302003 9170083 ~ 9188266 (-) True AMCG00000270
TU187643 lncRNA downstream 544681 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 638490 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 745770 8743871 ~ 8744499 (-) True G149087
TU187891 lncRNA upstream 3353 9494159 ~ 9496132 (-) True G149324
TU187892 lncRNA upstream 5427 9496233 ~ 9496585 (-) True G149325
TU187893 lncRNA upstream 6041 9496847 ~ 9497214 (-) True G149326
TU187901 lncRNA upstream 19319 9510125 ~ 9511350 (-) True G149332
TU187907 lncRNA upstream 43908 9534714 ~ 9534919 (-) True G149338
AMCG00000279 mRNA downstream 50933 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000276 mRNA downstream 119490 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000275 mRNA downstream 201057 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000272 mRNA downstream 279618 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000270 mRNA downstream 318117 9171366 ~ 9172152 (-) False AMCG00000270
AMCG00000289 mRNA upstream 7914 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000290 mRNA upstream 61436 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000291 mRNA upstream 72589 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000284 mRNA upstream 272809 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000309 mRNA upstream 430513 9921319 ~ 9925304 (-) True AMCG00000309
TU187888 other downstream 1660 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 444414 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1383430 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 2127577 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2926964 6557842 ~ 6563305 (-) False G148692
TU187910 other upstream 49805 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 265575 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 340949 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 440164 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2590737 12081543 ~ 12083214 (-) True G149751

Expression Profile