RNA id: TU187891


Basic Information

Item Value
RNA id TU187891
length 1974
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G149324
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9494159 ~ 9496132 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAGTATATATTAGACCCTTTCAAAGGAATTCATATAAAATGCCATGGGACTCACATTCTGTTTGTGGCAGAAGTTGACGGCCTGGAGGGTCTGCCACGTTATACTCTTCACCAGGTGCTCTGGAACCctgaggaagagaggagagaggccAGGGGGACACTGGTCATTTTTGCTTgctttaacatttattttgcctATATTATTACGCAGCAAATATGCCATTCTCGGCCATCTCAGATGAGAGCGTTATTTGTCCAGGAGACAACGGTCTACGCATGGTTTTCTGTAACAGCACGAGCACCGAATACACGCGTTGGCATAAAAACTAAACGGCCCCGGCGACGTCCTCCTCGTTATTTTATAGTGCAGTGTACATAGCAACTTCACAGCTGCTGCACAGATGTAGTAAacatctgtaattaaaaatgtgcctgCAGGCTTTGCGGAGACTGTAAAGAGGCCGATATAAAAGgcaaggaaaaaagaaagcttGCAAGGTCATTAACTTTTATGGGTTTTTCTGGGAACTGTATTACTGTGAAAAGCCCATCTGACAGTCATTTCCAGCTCCCTGCATTCACCTTACCTTCAGATCCCTTTCAGGAGCCTAAAGGGGCCGTCTGCGTTTCTATAAAAGCTCTCCACAGAAAGAGCTGGAGCTCGTGGTAAAAATGCACGAATCAGAGCAGCTACTCAACACAAAGCAGACGGCTGTGCCAGACTAGCACTGCCTTCTTCAGCTATGCCTTCAGAGCAACAAGTGAGGCTAGAAACGACCAGCGCTGGGTAACACAGTAAACACTATGAATTCCCAAATCAGATCTGATGTATGGCACGTTCTCGGTCTCTATTAGACCTGCCCATCATTTACAATGAGGTGCCTGCTATACTCCCTCTCCGATCTGAATCACACCAACAGTGCAGAGGGTTTGAAAACCAAAACGTTAATTGAAATACGACCAAATCCCACATACGCTGAGCAGAGAACACTACCAATTTAGACACtctaaaaaaaagtaaacaaattgcATCCTGATGAATATAAAAGTAGACATTGCGTGTTAAAAACTTGAGTTGGAGCCTAACTTGTGTTGTGTAGGAGCAGCTCATTGTATGGACGCACATTGTGTTAAAGCTTCCTGAATGCAGGTGCTACAAGTGGAACAAAATTAAGtcaggagcaggaggaggaaagagaaaaagtaaaacaatagcTTTTTGCTTAACTCTGCAAAAACCTAATAAAAAAGCCCTGGCCctccccttttcttttcttgtcctTTCTTGGCCCATTATCAGCCAAAGACAGGCTGGCCTGACGCGCCCGTCGTAAACGCAGCTGCTCCCAACACTGTCGCTTTGTTGCCCGGGGACCCCCATCAATCAGCATTGTCCATCCCGCTGGCTAAATCGAGCCTCGTGATCGGTAATTTACGCAGCGCCCGGCCTCCCCCTGATTGATGACGCCGCGGAGCCCAGCTGCCAGGAGCGACCCACAGAGAGCCCTGTAAACTGAAACAAGATCGTAACTCAGCGCCTGTCGGGCAAGACAAACACCGCAAGTGCCGGATGCTCTGTGCCCACTGTCCCCGTCCGTCGCTGCGCGGCAATATTGACCGGCCTGGCATTTGGGAGTGTATAACCATAAACATGCCGCAACAAACAGCACACATTCCATGGCAACAGCTAAACAATGCTAGCTGTCAGCAGATAAAGTGTGCTTCCCAGAGCGACGCCCCACACAGGGGAAAAATACGGGCACCTTGCTGCTGCTGGACCGACACACGGGCATCAGTGGCAGCGATTTGTCACCCccgccctccctccctcaaGAGCATCAGCAGGCCTTACCCTCGGGGGTAGCGGTCGAGCTCGTTGAGGACGGTGTGGTCGCAGTACTCAAACACCAGGTGCAGCTTGCGCTTTCGCCGGAACACTTCGATCAGGTTAACCAGGTTGGAGTGCTTCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187889 lncRNA downstream 3353 9490269 ~ 9490806 (-) True G149322
TU187809 lncRNA downstream 130724 9361332 ~ 9363435 (-) True G149268
TU187772 lncRNA downstream 305893 9170083 ~ 9188266 (-) True AMCG00000270
TU187643 lncRNA downstream 548571 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 642380 8851316 ~ 8851779 (-) True G149125
TU187892 lncRNA upstream 101 9496233 ~ 9496585 (-) True G149325
TU187893 lncRNA upstream 715 9496847 ~ 9497214 (-) True G149326
TU187901 lncRNA upstream 13993 9510125 ~ 9511350 (-) True G149332
TU187907 lncRNA upstream 38582 9534714 ~ 9534919 (-) True G149338
TU187908 lncRNA upstream 40180 9536312 ~ 9536536 (-) True G149339
AMCG00000279 mRNA downstream 54823 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000276 mRNA downstream 123380 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000275 mRNA downstream 204947 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000272 mRNA downstream 283508 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000270 mRNA downstream 322007 9171366 ~ 9172152 (-) False AMCG00000270
AMCG00000289 mRNA upstream 2588 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000290 mRNA upstream 56110 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000291 mRNA upstream 67263 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000284 mRNA upstream 267483 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000309 mRNA upstream 425187 9921319 ~ 9925304 (-) True AMCG00000309
TU187888 other downstream 5550 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 448304 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1387320 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 2131467 7361222 ~ 7362692 (-) True G148851
TU187112 other downstream 2930854 6558826 ~ 6563305 (-) False G148692
TU187910 other upstream 44479 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 260249 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 335623 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 434838 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2585411 12081543 ~ 12083214 (-) True G149751

Expression Profile