RNA id: TU187893



Basic Information


Item Value
RNA id TU187893
length 368
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G149326
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9496847 ~ 9497214 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAATGTTTTCCTGATGAGGTGCAGCTGGTCTACGTCTGATTTTCCCGGCCACAGGGGGACTCCCGATAGCAGCTCGGCGAAGACGCAGCCGATGGCCCACACGTCGACTGGGGGGCCGTACTGCGTGTCACCCACCAGGAGCTCAGGGGCGCGGTACCAGCGCGTGGCCACGTAGTCGGTGTAGTAGTCACAGGGCCCCGCTGCACACAAGACAGGAATTATTTTCACTAGGGGCTCTGCGAGTTAGTCAACCCCTTCAGACTTTAATCAACCACCTTTCCAAGCTCCACCAAGCCTGCCAGTGAGGCACTGTGGGCGTCTATTGGAGGgcagacagaaacaaacaatgcCACAGATCTCATATTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU187892 lncRNA downstream 262 9496233 ~ 9496585 (-) True G149325
TU187891 lncRNA downstream 715 9494159 ~ 9496132 (-) True G149324
TU187889 lncRNA downstream 6041 9490269 ~ 9490806 (-) True G149322
TU187809 lncRNA downstream 133412 9361332 ~ 9363435 (-) True G149268
TU187772 lncRNA downstream 308581 9170083 ~ 9188266 (-) True AMCG00000270
TU187901 lncRNA upstream 12911 9510125 ~ 9511350 (-) True G149332
TU187907 lncRNA upstream 37500 9534714 ~ 9534919 (-) True G149338
TU187908 lncRNA upstream 39098 9536312 ~ 9536536 (-) True G149339
TU187909 lncRNA upstream 39615 9536829 ~ 9537094 (-) True G149340
TU187912 lncRNA upstream 45298 9542512 ~ 9542776 (-) True G149343
AMCG00000279 mRNA downstream 57511 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000276 mRNA downstream 126068 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000275 mRNA downstream 207635 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000272 mRNA downstream 286196 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000270 mRNA downstream 324695 9171366 ~ 9172152 (-) False AMCG00000270
AMCG00000289 mRNA upstream 1506 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000290 mRNA upstream 55028 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000291 mRNA upstream 66181 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000284 mRNA upstream 266401 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000309 mRNA upstream 424105 9921319 ~ 9925304 (-) True AMCG00000309
TU187888 other downstream 8238 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 450992 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1390008 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 2134155 7361222 ~ 7362692 (-) True G148851
TU187112 other downstream 2933542 6558826 ~ 6563305 (-) False G148692
TU187910 other upstream 43397 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 259167 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 334541 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 433756 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2584329 12081543 ~ 12083214 (-) True G149751

Expression Profile