RNA id: TU187910


Basic Information

Item Value
RNA id TU187910
length 649
RNA type TUCP
GC content 0.64
exon number 1
gene id G149341
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9540611 ~ 9541259 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCATACATGTGGTAGGTGAGCCTCTCAATGAGCTTGACCACAGTGCCGGCCTTGATGATGGGGATGCCGGTCTTGCTCTGGATGTTGTCCTCGAACACAATGTTCTCCTCGGAGTCCTGCACGGCGAAGCGGTACTGTTCGGGCGAGGGGAGCCGCAGGGGCTGGGCCTGCTCCTCGTGCAGCAGCACTGTGTCCAGCATGCGGTCCAGAGTGCTGCGGTACTGCAGGGTGACCAGTGCCGCCATCCAGGCGCTCTTGTCCTCGGCGCTCTTGGCATAATAGGCGGCGCAGTTCTCGTCCTTGCTCACGATGTCGAAGGCGTGGCGCAGCTCGGTCGTGTCCTCACGGTCGGCGATGCGCACCTTCCGCAGCACGAACTTCTCCTTGAGCCGGAACTCGGCCCCACTGCCCGCGCCCGGCAGCCGCGAGCTCTGCCCGTGGTTGGCCTTGCAGCTGATCATCAGCCCGTCGAACAGGAAGATGTGGCGCTCGTGCTTGGCGCCGGCGCGGCACAGCGGGCCCTCCAGGATAAACTCGCTGCAGCACTGCCCGATGTCCTTGCCCTCCCAGCCGTCGATGCTCTTCTGGATTTCGTTCATCCGCTTGATGGCCAACTGCTTGCTGCGCACCTGCCGGCTGTATAGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187909 lncRNA downstream 3517 9536829 ~ 9537094 (-) True G149340
TU187908 lncRNA downstream 4075 9536312 ~ 9536536 (-) True G149339
TU187907 lncRNA downstream 5692 9534714 ~ 9534919 (-) True G149338
TU187901 lncRNA downstream 29261 9510125 ~ 9511350 (-) True G149332
TU187893 lncRNA downstream 43397 9496847 ~ 9497214 (-) True G149326
TU187912 lncRNA upstream 1253 9542512 ~ 9542776 (-) True G149343
TU187913 lncRNA upstream 2328 9543587 ~ 9544030 (-) True G149344
TU187915 lncRNA upstream 3408 9544667 ~ 9544914 (-) True G149346
TU187947 lncRNA upstream 30875 9572134 ~ 9574131 (-) True G149367
TU187976 lncRNA upstream 203505 9744764 ~ 9747106 (-) True G149391
AMCG00000289 mRNA downstream 39461 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000279 mRNA downstream 101275 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000276 mRNA downstream 169832 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000275 mRNA downstream 251399 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000272 mRNA downstream 329960 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000290 mRNA upstream 10983 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000291 mRNA upstream 22136 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000284 mRNA upstream 222356 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000309 mRNA upstream 380060 9921319 ~ 9925304 (-) True AMCG00000309
AMCG00000312 mRNA upstream 401166 9942425 ~ 9955020 (-) True AMCG00000312
TU187888 other downstream 52002 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 494756 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1433772 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 2177919 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2977306 6557842 ~ 6563305 (-) False G148692
TU187980 other upstream 215122 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 290496 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 389711 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2540284 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2981261 12522520 ~ 12542310 (-) True G149847

Expression Profile