RNA id: TU187913


Basic Information

Item Value
RNA id TU187913
length 444
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G149344
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9543587 ~ 9544030 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGATATCTGGCTCCTGTTTCAAGCAGTAAGGCTGGTTCTGGTATTGCTGGATCTCCCCTGTGATCTCCGCTACTTTCCGCCGCTTGCTGAAGTTGATCAGGTCTTTCCCATGTCGCTTCAGGAAGTCGGGGTTCCCTTCTTCTGTCTTCAGGATATTGGTGAGATATATACCTaagggagacaggcagacagcTTGCTCTCAAATGACTCTCTGGGAAACCTTAATTTTCCTGTATAATAAAAGATTCTGTACTTTCTTGTACCCAATTTTGCAGCACTTTTGAATGGAAGAACACAGTCACCCCCCACCCAACAGCCCCATGTGAGATTTGAAAAGGTCTTACCAAAGAAAGGCACACAAGGTGGATTTATTGACTTGAGTTTTGCTAAATACTTCTTAAAATGGTCTTGACTGAGTTCTACAGCTTCCTCTAagattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187912 lncRNA downstream 811 9542512 ~ 9542776 (-) True G149343
TU187909 lncRNA downstream 6493 9536829 ~ 9537094 (-) True G149340
TU187908 lncRNA downstream 7051 9536312 ~ 9536536 (-) True G149339
TU187907 lncRNA downstream 8668 9534714 ~ 9534919 (-) True G149338
TU187901 lncRNA downstream 32237 9510125 ~ 9511350 (-) True G149332
TU187915 lncRNA upstream 637 9544667 ~ 9544914 (-) True G149346
TU187947 lncRNA upstream 28104 9572134 ~ 9574131 (-) True G149367
TU187976 lncRNA upstream 200734 9744764 ~ 9747106 (-) True G149391
TU188016 lncRNA upstream 350516 9894546 ~ 9897750 (-) True G149414
TU188048 lncRNA upstream 375882 9919912 ~ 9921022 (-) True G149438
AMCG00000289 mRNA downstream 42437 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000279 mRNA downstream 104251 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000276 mRNA downstream 172808 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000275 mRNA downstream 254375 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000272 mRNA downstream 332936 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000290 mRNA upstream 8212 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000291 mRNA upstream 19365 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000284 mRNA upstream 219585 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000309 mRNA upstream 377289 9921319 ~ 9925304 (-) True AMCG00000309
AMCG00000312 mRNA upstream 398395 9942425 ~ 9955020 (-) True AMCG00000312
TU187910 other downstream 2328 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 54978 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 497732 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1436748 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 2180895 7361222 ~ 7362692 (-) True G148851
TU187980 other upstream 212351 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 287725 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 386940 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2537513 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2978490 12522520 ~ 12542310 (-) True G149847

Expression Profile