RNA id: TU187980


Basic Information

Item Value
RNA id TU187980
length 1056
RNA type TUCP
GC content 0.45
exon number 4
gene id G149395
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9756381 ~ 9766794 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTACTAAAGCCCAGTGTAGGTCATTTCACTTGCCAGGCTGACAGGACGTGTGCAGCTGCAGATCTGCGTCAGGGAGAGGGCGGACAGACGCGTCGAACTGGGACTGTTTctgagtctgtgtctgtgccaNNNGCTTATGTTCCCCAGTCGGAAATCTGGCATGTAAAGTCTGTAGCTTTCCATCCTTGCTAAAAGTCTGCAATAAAGTCAACCAAGTGCTTCTTTGAAATCAGTGATCGCAGGTGCACTTGGTGTCTGGAAGGACACACTGTGGCTGTGGGATATCAAACCACCTCCAATATGCAAAGAGTTTACAGAGAAAGCAAACCTCGATGGACAAGCCCCTTGGTGAAGCTCCCTAAGCCCTCTTCTCTTATCCCACTTTGAGAGAGCTGTTCACAAGTGTTTCACATttgaaagagaagagagagtaAGGGGGTTCCCAGATGATTCCCTCTGGTTGACATACTGCACCCAAACACCAGAGTGTTGGAGAGAGTCAAGACTCTGATTCTGCCACTGCTGGGCTGAAGAGTCTCAACGCACAACTCATGGAGACCCCAAGATGTAGTCTGCAGACTTTGGGGTTGGCAGCCACGTCTGGGGAATGCCTTCTTCAGCCAGTGACATTCGACTGCAGGCCTTTTTCCCCTGTTAATATCAAATTATTatctcagttgtttttttttctattcccaTTGTGTAAACCCAGCTCTTATATCTGCATGTCTTTTctatctgaatacattttgtacttCCATAAGCAAGGCTTGCCGCATGTTCTGTTCCATTCAGGTTTTCTCCATTCTCCATCTGCAACAATGAATGTACAAAAGGCTGCAAAAACTAGTTCTCCCATGAGATACTATGCAGTCCAAATCATGGAGCTAAAGGGACCACTTCTTTGTCTATTTTTGCTGTCATCCGCCTAGAGGATCAAGACAGTTATGTTTTGCAGGATCTTCCTTCCATAGATATCGGTAATATGGATACACCTCAACAATGCCAATGTAAGAATCCGTGCagataacaaataaaacattgttttattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187976 lncRNA downstream 9275 9744764 ~ 9747106 (-) True G149391
TU187947 lncRNA downstream 182250 9572134 ~ 9574131 (-) True G149367
TU187915 lncRNA downstream 211467 9544667 ~ 9544914 (-) True G149346
TU187913 lncRNA downstream 212351 9543587 ~ 9544030 (-) True G149344
TU187912 lncRNA downstream 213605 9542512 ~ 9542776 (-) True G149343
TU188016 lncRNA upstream 127752 9894546 ~ 9897750 (-) True G149414
TU188048 lncRNA upstream 153118 9919912 ~ 9921022 (-) True G149438
TU188096 lncRNA upstream 262938 10029732 ~ 10030794 (-) False AMCG00000300
TU188173 lncRNA upstream 827932 10594726 ~ 10594935 (-) True G149532
TU188180 lncRNA upstream 945683 10712477 ~ 10712681 (-) True G149539
AMCG00000291 mRNA downstream 186021 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000290 mRNA downstream 203190 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000289 mRNA downstream 255231 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000279 mRNA downstream 317045 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000276 mRNA downstream 385602 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000309 mRNA upstream 154525 9921319 ~ 9925304 (-) True AMCG00000309
AMCG00000312 mRNA upstream 175631 9942425 ~ 9955020 (-) True AMCG00000312
AMCG00000308 mRNA upstream 194100 9960894 ~ 9970582 (-) True AMCG00000308
AMCG00000310 mRNA upstream 206193 9972987 ~ 9997466 (-) True AMCG00000310
AMCG00000311 mRNA upstream 243342 10010136 ~ 10021096 (-) True AMCG00000311
TU187910 other downstream 215122 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 267772 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 710526 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1649542 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 2393689 7361222 ~ 7362692 (-) True G148851
TU188004 other upstream 64961 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 164176 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2314749 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2755726 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 4057160 13823954 ~ 13826709 (-) True G150138

Expression Profile