RNA id: TU188016


Basic Information

Item Value
RNA id TU188016
length 2935
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G149414
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9894546 ~ 9897750 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtttttaaaatatttatttcaaataacagAGGTCAACaggctaaataaaaaaaatacagatcaaaAGGCATTGCTTTTGTTCCTCATATTTAATGACATGTCTATGAGACATGCATTAAATACCAGAACAAACTTGGGTTTTGCCGAGTCACATTAGCAGCAGTTACAATCTGCTACCAGCGGGTGTCACTAATCTGCTCCAAAATCTCTCacttccccctcccccttcagCTAGGTATGCAAAAGTTGTCTTGCAGTACATTTTACAGCGTAAAATCTGAAGCAATATCACAACCTATTAAGGCTTGTTTCTCACATTCCCACCCtccacacacagtactgtgctcTAACTGAATAATTGAGATGTTTAAAGTCACGGGTCTGGAACGGTTTCACTGGCCCTGCTGGTGTGTCTGATTGGGATGTTACAGCAGGAGATTGAAGGCAGTCGCAGCACCGTAGGATATCAAGAGCTACTGACGGAGACTGCAGTGAGTGAACTGCAGTCACTGCCTGCTGTGATCCTATTGTGAAAATGTTAGACATATATCTCTCTAAAACAGGAAACaactatttaaaaacatcatttaaatgctttCTCAGAAGTCTAACTCAAAACTTCACATTCTTTCCCTGGTGTACATCTCAAATGACTTTTGTAGCGCTTTTCACAATATAAACCCAAATGgctgcatgttttaaaattgtatttcaaagtaCGAAGCTTCTTTATTACTGTTGCTGTTGTCATTACGATAACTAATTAAACCCATGTGTGTTCTGTTGGTGGAGGTCTGGCACAGTTTAATTACTGTGTAATTACTCGTCTGTAAGGCAAATTGACAGATACTCACGCATCTTTGAACACTGGTGACTTCCTGTCATCTACACTTTGCTTGTGTGAGACATCTTACAACACTTATAGAGATTAAATGCAGTTCATGTCTTACACCTATTTTGAATTTAACCTGTAACCTTGGTAAGAAATATGCTTTGTTCAAACTACAGAATGGTATAAAAGCGATCTCAGCAGTGAGATTAGTGTAACAGCTTTTAATGACACGCCAAACCCCAAGCTTtcgcaataataataataaaaaatgaaaacaaaaaagcatattatacatatttacatcaTAAGCATTTTACTTTACTTCCAAGAGCCGGTGCAATGGCTTCATTGTACAAGTTAtatgccattaaaaacaaaaatacacaaccaaaatgaaaaaacaaaacaaaaaactatatagAAATCTGTCCTTGTAAGTAAGAAAGAGGACTTCTAGCCAACGggctatatttatttgcttatattTAAATACGGACATCTCTCTCTTAAACGTCCTCCACTAGAATCCAATTCTCCCCCAAAATgtcagttttttgtttgctgtgtggGTTGCATGAGAAATTAAGTTATAAGACTGtcaaatagtttgtttgtattcagaGACTAATCCGCTGGGTTTGGTCAACCACAGTCATTCTCAGAGCTCTCGATTTCTAATACGAAAAAGCTACGTTCGGAAATATCATCATCttctttccattattattaagaaaCGAGCTCAACAAGCTCAGTGTAACTGTAAAGATGATTTTGTGGTGCATTTTGCAAACAACAAAGTtgtgtggatttaaaaaaaagaaaaaattcaacaacaaaaacaaaataaaaacaaacctcaaaatgcatttcagaatatatgaccaaacctttgaaaatgtgaaatataagtcaaatataaaatcaattttccAATCCGGTCTATGCCTTGCTAAATAGGCAATGCCTAAATTGGCGCCCCCCAACCCCGTGTAATGTGCGTGCATGTATGCATTGCACTGCATAATTGCATGTTTCATCCCTCTGTGGGAAGACTAGGTTTGGTTTGCCACTATATACTATTTGTTAATGTGGAATAAAAGTGAGAATCCCCCAAGCAATTTGCCTTTGTGGTTTGATTTCAATGGCACAAAAGGGACTAGTCTGTTTATTCAGGAAACCTAAAGACTTGGAGACAACAACCTCTAATTTTCACTAATAAGTAACTTGATAGtagaatgaaaaaagtattatgGACAACGTACAGGATTgtgtgtacaaaaaaaatggtACATTATTCCAAAACCTGCCAGAATTAATAAGGTTTACAGTTACTGCTCTCATGTTGGCAAAAGACAAACTTGGAAATTCCCTCTGGAGTGCCTACCCAGGTAGCAGGTAACACTCACAGctagaaattatttaaattactcaCCATATAATTGCTAGTGAAAAACATTCTGCTTCAAACTCTTGACtttccttttcctgttttgGAAGCATATGAAAGTACAATGTATACCGCATTAGACCTTCTGTAGAAAATCAAGGAATAAAGCACTTAAAAGTTTAGTATCGtacactaattaaataattacaaaatccGGATTGCTAATCTTTGATCTACTTGCTCTGCAGGAGGTGGGATTCTGATAAGGGAAGAGAATTAGGACATATGACTGTTATGTCTCACCTGATGTGATAAACAGCTTTCTTACATTTCATGGGGCTAGACCTGGTAAATGCTTTCATGTtggatggggtggggggagggaatCACGGACACGCACTTCTTAGATTAGTGGTGTATAGAGAGTGCAAGCTATTCAGTTTCAAAGAACATTACAGAAGGctttcattgtctttttttctttctttcaactTTTTAAAGTCAtcctcaaacaaacaaaacaactaaatatcTAACATTGTGAGTAGAAAGTGCAAATATTTTGGCACCACTTCTTGCTTGAACTGGTACTGTTTTTATCTCCTTTTattcctccttctctctctctacccccccTTCACTCTCTCTGAGCGCTTACAGATGAAAGCCCGCTGTTGCCTCTGCTCCTGCTTCAGCTCCTGAGACCGTCCCTCTT

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187976 lncRNA downstream 147440 9744764 ~ 9747106 (-) True G149391
TU187947 lncRNA downstream 320415 9572134 ~ 9574131 (-) True G149367
TU187915 lncRNA downstream 349632 9544667 ~ 9544914 (-) True G149346
TU187913 lncRNA downstream 350516 9543587 ~ 9544030 (-) True G149344
TU187912 lncRNA downstream 351770 9542512 ~ 9542776 (-) True G149343
TU188048 lncRNA upstream 22162 9919912 ~ 9921022 (-) True G149438
TU188096 lncRNA upstream 131982 10029732 ~ 10030794 (-) False AMCG00000300
TU188173 lncRNA upstream 696976 10594726 ~ 10594935 (-) True G149532
TU188180 lncRNA upstream 814727 10712477 ~ 10712681 (-) True G149539
TU188212 lncRNA upstream 1235651 11133401 ~ 11134191 (-) True G149567
AMCG00000284 mRNA downstream 128778 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000291 mRNA downstream 324186 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000290 mRNA downstream 341355 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000289 mRNA downstream 393396 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000279 mRNA downstream 455210 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000309 mRNA upstream 23569 9921319 ~ 9925304 (-) True AMCG00000309
AMCG00000312 mRNA upstream 44675 9942425 ~ 9955020 (-) True AMCG00000312
AMCG00000308 mRNA upstream 63144 9960894 ~ 9970582 (-) True AMCG00000308
AMCG00000310 mRNA upstream 75237 9972987 ~ 9997466 (-) True AMCG00000310
AMCG00000311 mRNA upstream 112386 10010136 ~ 10021096 (-) True AMCG00000311
TU188004 other downstream 62413 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 127752 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 353287 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 405937 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 848691 9035557 ~ 9045855 (-) False AMCG00000260
TU188051 other upstream 33220 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2183793 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2624770 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 3926204 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 4672212 14569962 ~ 14572432 (-) True AMCG00000436

Expression Profile