RNA id: TU188051


Basic Information

Item Value
RNA id TU188051
length 1701
RNA type TUCP
GC content 0.45
exon number 4
gene id G149441
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9930970 ~ 9935550 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGTCAGCTCTGACAAAGTGGGAGAGTCAGGAACAATGACAATGTTGCAAACATTGTGTGTCATTATATGTTCACAAAATTAGTGACGCTCGTCTTCCTGAAACAGCCCACAATTCACAAACCTCCCGCATCAATATCTTTGGCATTTCCACACTGTACAGCTGACGTTCGCTTCAGtCCGCTGCCTTGAGAGCAATGGCCCAGTTCAAAATGCAGGGAGTGACAATGTGTCTGCTCCTCTTCAGCCTTTGCCTTTTGTCACGGCCCTCTGCCTCAGACTCTCTTACTGTGGCTGGGGACCTGTTCCTACATTACTCCAGCAACAAGAATTGTCTCACTAAGCAAGAGCTGCTGAACCTGCTGACTGAGGAGTTTGGGGACGACGCCAAGTTGCACCAGGACTTGCTGTGGGACATGTGGGCCTTTGCCGACGTGGATGCGAGTGGCTGTGTGAGCCGCTCAGAATACAATCGACTGATCTACGCCCTTACTAAATGAACACTCACTGAACACACTTGCTGAACGCtgcctgaacacacacacatctctcacTGAacactgtctgtgtctgtgtacatgAATCACTCTGCAGGACTCTGGTGTGCGGGGGTGGGGATGTgctatacagacatgctcaaatttgttggtacccctccacaaaaaacaaagaatgcacaatttcctgtgaaataacttgaaatccaccattgtttattccatatttaatagaaatcagactttgcttttgattttgtttttcaacatcatattgtaaataattaatcaaatgaaaagggcatggacaaaaatgatggcaccctcaacctaatattttgttgcacaacctttaaaGGCagtcactgcaatcaaatgttttctgtgtctctcaatgagacttctgcacctgttaacaggtagtttggcccactcttcctgagcagactgctccagctgtctcaggtttgatgggcgACTTCTCCAGACTGctagtttcagctctttccatagatgttcgataggattcagatcaggacttaTAGAAGGTCACTTCAGAACAGCCCaatattttgttcttatccattcttgggtgcttttagccgtgtgttttgggtcattatcctgttggaggacccatgacctgcaactgagacagagctttctgacactgggcagtaagTTTCGCTCCAGAGTGCCTTGATAGTCTGGAGATTTCATTGTGCACAGactcaaggcaccctgtgccaggcgcagcaaagcagccccaaaacataaccgagcctcctccatgtttcactgtaggtatggtgttcttttctttgaaagcttcatttttttccatctgcAAACACAGAGCTGAtttgacttgccaaaaagctccagttttgactcatctgtccaaaggatctgtcccagaaggattgtggttgtcaatatgcattttagcaaattgaagtctggcttttttacgtttgtctttcaaaagtggagtctttcgctcaaaaagcgacggatgatgcgatcagaaactgacgtgcCTTCACCTTGgattcagcttgtatctctttggcagttatccttggttctttttctgccattcgcactgtCCTTCTTTTCAATCTGAGGTTGAtgttcctcttgcggccgcacccagggaggttggctacacttccatggaccttgaacttcttaataatatttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188048 lncRNA downstream 9948 9919912 ~ 9921022 (-) True G149438
TU188016 lncRNA downstream 33220 9894546 ~ 9897750 (-) True G149414
TU187976 lncRNA downstream 183864 9744764 ~ 9747106 (-) True G149391
TU187947 lncRNA downstream 356839 9572134 ~ 9574131 (-) True G149367
TU187915 lncRNA downstream 386056 9544667 ~ 9544914 (-) True G149346
TU188096 lncRNA upstream 94182 10029732 ~ 10030794 (-) False AMCG00000300
TU188173 lncRNA upstream 659176 10594726 ~ 10594935 (-) True G149532
TU188180 lncRNA upstream 776927 10712477 ~ 10712681 (-) True G149539
TU188212 lncRNA upstream 1197851 11133401 ~ 11134191 (-) True G149567
TU188218 lncRNA upstream 1240131 11175681 ~ 11176066 (-) True G149573
AMCG00000309 mRNA downstream 5666 9921319 ~ 9925304 (-) True AMCG00000309
AMCG00000284 mRNA downstream 165202 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000291 mRNA downstream 360610 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000290 mRNA downstream 377779 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000289 mRNA downstream 429820 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000312 mRNA upstream 6875 9942425 ~ 9955020 (-) True AMCG00000312
AMCG00000308 mRNA upstream 25344 9960894 ~ 9970582 (-) True AMCG00000308
AMCG00000310 mRNA upstream 37437 9972987 ~ 9997466 (-) True AMCG00000310
AMCG00000311 mRNA upstream 74586 10010136 ~ 10021096 (-) True AMCG00000311
AMCG00000303 mRNA upstream 90079 10025629 ~ 10028313 (-) True AMCG00000303
TU188004 other downstream 98837 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 164176 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 389711 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 442361 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 885115 9035557 ~ 9045855 (-) False AMCG00000260
TU188437 other upstream 2145993 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2586970 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 3888404 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 4634412 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 5277864 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1914333 True 3420 TUCP 0.40 2 NC_048584.1 21386329 ~ 21389778 (+)
striped catfish (Pangasianodon hypophthalmus) TU439085 True 10809 lncRNA 0.38 2 NC_047620.1 5091602 ~ 5102430 (+)