RNA id: TU188218


Basic Information

Item Value
RNA id TU188218
length 386
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G149573
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11175681 ~ 11176066 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttctttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatac

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188212 lncRNA downstream 41490 11133401 ~ 11134191 (-) True G149567
TU188180 lncRNA downstream 463000 10712477 ~ 10712681 (-) True G149539
TU188173 lncRNA downstream 580746 10594726 ~ 10594935 (-) True G149532
TU188096 lncRNA downstream 1144887 10029732 ~ 10030794 (-) False AMCG00000300
TU188048 lncRNA downstream 1254659 9919912 ~ 9921022 (-) True G149438
TU188247 lncRNA upstream 162325 11338391 ~ 11368231 (-) True G149596
TU188254 lncRNA upstream 261301 11437367 ~ 11437819 (-) True G149603
TU188272 lncRNA upstream 350804 11526870 ~ 11527092 (-) True G149616
TU188343 lncRNA upstream 605137 11781203 ~ 11782635 (-) True G149665
TU188355 lncRNA upstream 611025 11787091 ~ 11789872 (-) False AMCG00000334
AMCG00000318 mRNA downstream 314156 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000317 mRNA downstream 348693 10814984 ~ 10826988 (-) True AMCG00000317
AMCG00000316 mRNA downstream 391958 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000295 mRNA downstream 882209 10278809 ~ 10293472 (-) True AMCG00000295
AMCG00000296 mRNA downstream 966453 10161709 ~ 10209228 (-) True AMCG00000296
AMCG00000319 mRNA upstream 31383 11207449 ~ 11210136 (-) True AMCG00000319
AMCG00000320 mRNA upstream 44854 11220920 ~ 11221514 (-) True AMCG00000320
AMCG00000349 mRNA upstream 134693 11310759 ~ 11473260 (-) True AMCG00000349
AMCG00000322 mRNA upstream 460674 11636740 ~ 11637036 (-) True AMCG00000322
AMCG00000321 mRNA upstream 486791 11662857 ~ 11669320 (-) True AMCG00000321
TU188051 other downstream 1240131 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1343548 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1408887 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 1634422 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 1687072 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 905477 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 1346454 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2647888 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 3393896 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 4037348 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile