RNA id: TU188247


Basic Information

Item Value
RNA id TU188247
length 346
lncRNA type intronic
GC content 0.41
exon number 2
gene id G149596
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11338391 ~ 11368231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttccctcactgtatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgattttagcaattttgagcgtggcatggttgttggtgccagacgggccatTTCAgtaatctgctcagttactgggatgttcacgcacaaccatttctagggtttacaaag

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188218 lncRNA downstream 162325 11175681 ~ 11176066 (-) True G149573
TU188212 lncRNA downstream 204200 11133401 ~ 11134191 (-) True G149567
TU188180 lncRNA downstream 625710 10712477 ~ 10712681 (-) True G149539
TU188173 lncRNA downstream 743456 10594726 ~ 10594935 (-) True G149532
TU188096 lncRNA downstream 1307597 10029732 ~ 10030794 (-) False AMCG00000300
TU188254 lncRNA upstream 69136 11437367 ~ 11437819 (-) True G149603
TU188272 lncRNA upstream 158639 11526870 ~ 11527092 (-) True G149616
TU188343 lncRNA upstream 412972 11781203 ~ 11782635 (-) True G149665
TU188355 lncRNA upstream 418860 11787091 ~ 11789872 (-) False AMCG00000334
TU188382 lncRNA upstream 473664 11841895 ~ 11845075 (-) False AMCG00000336
AMCG00000320 mRNA downstream 116877 11220920 ~ 11221514 (-) True AMCG00000320
AMCG00000319 mRNA downstream 128255 11207449 ~ 11210136 (-) True AMCG00000319
AMCG00000318 mRNA downstream 476866 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000317 mRNA downstream 511403 10814984 ~ 10826988 (-) True AMCG00000317
AMCG00000316 mRNA downstream 554668 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000322 mRNA upstream 268509 11636740 ~ 11637036 (-) True AMCG00000322
AMCG00000321 mRNA upstream 294626 11662857 ~ 11669320 (-) True AMCG00000321
AMCG00000330 mRNA upstream 342443 11710674 ~ 11726189 (-) True AMCG00000330
AMCG00000331 mRNA upstream 358369 11726600 ~ 11730877 (-) True AMCG00000331
AMCG00000329 mRNA upstream 366596 11734827 ~ 11760237 (-) True AMCG00000329
TU188051 other downstream 1402841 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1506258 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1571597 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 1797132 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 1849782 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 713312 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 1154289 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2455723 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 3201731 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3845183 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile