RNA id: TU188254


Basic Information

Item Value
RNA id TU188254
length 453
lncRNA type intronic
GC content 0.46
exon number 1
gene id G149603
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11437367 ~ 11437819 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gataacagcacacggcacgaggtccgtgtggtttggaacaaaggcaggcCGGTTTGGCTTTGTCCAGTAACTTCCACTcggtcgatgcacctggaagttggggtttcgcgaatgtagagtcttttccaaacagattttccactggtttgaaggctccaaggttgtgcacaaaatcttctttgtaagcagggttccaccgtagttacttgaagacaaagtctttgaggaaagcagggccctgttcgttccaagggtcaagtttcttaagactcaaatagctatttaaatgactgacactttcgtatacagtcgacttagtcaattgtccagctgtaaaactccactgatcaggtgggcacaggcgggcatgcgcagtctgtaaagttctttatttaataaagaattcttcgtacggctcaatctccttctcccaggttaactcttctgttgccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188247 lncRNA downstream 69136 11338391 ~ 11368231 (-) True G149596
TU188218 lncRNA downstream 261301 11175681 ~ 11176066 (-) True G149573
TU188212 lncRNA downstream 303176 11133401 ~ 11134191 (-) True G149567
TU188180 lncRNA downstream 724686 10712477 ~ 10712681 (-) True G149539
TU188173 lncRNA downstream 842432 10594726 ~ 10594935 (-) True G149532
TU188272 lncRNA upstream 89051 11526870 ~ 11527092 (-) True G149616
TU188343 lncRNA upstream 343384 11781203 ~ 11782635 (-) True G149665
TU188355 lncRNA upstream 349272 11787091 ~ 11789872 (-) False AMCG00000334
TU188382 lncRNA upstream 404076 11841895 ~ 11845075 (-) False AMCG00000336
TU188383 lncRNA upstream 407603 11845422 ~ 11845717 (-) False AMCG00000336
AMCG00000320 mRNA downstream 215853 11220920 ~ 11221514 (-) True AMCG00000320
AMCG00000319 mRNA downstream 227231 11207449 ~ 11210136 (-) True AMCG00000319
AMCG00000318 mRNA downstream 575842 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000317 mRNA downstream 610379 10814984 ~ 10826988 (-) True AMCG00000317
AMCG00000316 mRNA downstream 653644 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000322 mRNA upstream 198921 11636740 ~ 11637036 (-) True AMCG00000322
AMCG00000321 mRNA upstream 225038 11662857 ~ 11669320 (-) True AMCG00000321
AMCG00000330 mRNA upstream 272855 11710674 ~ 11726189 (-) True AMCG00000330
AMCG00000331 mRNA upstream 288781 11726600 ~ 11730877 (-) True AMCG00000331
AMCG00000329 mRNA upstream 297008 11734827 ~ 11760237 (-) True AMCG00000329
TU188051 other downstream 1501817 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1605234 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1670573 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 1896108 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 1948758 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 643724 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 1084701 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2386135 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 3132143 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3775595 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile