RNA id: TU188415


Basic Information

Item Value
RNA id TU188415
length 1457
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G149730
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11997838 ~ 11999294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAGCatggcttttttatttatggtgCAAATATAGAAgaatacaattattgtatttaaaattgcatagagtaaagcatttttatttcctctggACTGTATATTTAGTTATATCGTATTACACTTTGTGATGCGGGGGTGAGGTTCAGAAGGATGGTCAGCCTACAGCAAATATctgcatataaaaaaacaaaacggaaaTTAAAAAACGGCAACAGAAGTATTTCAGTAAAACACAAAGTACAATGTGCGGAGGTTTGCGCTGTGGCCCTCGGGGGCCTGGGACAGTGGGAACAGGCCGGCTGTGTGAGCGTTTCACTCGCTGTACTGCAGGCCGCCCGAGTCAGGGAAGCTCACCGGAGAAATAAAGAAGTGGGCTAATGATACTGGGGCCCCTGTAAACACGACACAGCCCTAACACAGGCAAGAAACACGGGAACGTCTGAAGATGAGCCTATTTCATTTATGTCTAGTGAAGCCACAGAGTTACAGTGTAATCCCTGTTCAGTATGCTTGACTTAAATAGAGCATGCACCCCCACAAACTAGAACGGTCTGAGGTTCAAGGTGAAAAACAGCAGATAAACATTGAAAGGGGCTTATTTCAAATGAGTTAGGTGACTCATATTGAATGCCAAACCACAATCAGATCTACGTAGCTCTCACGTGCACTAAGGGGATTTTGATTACTGTGCCATCTTTTACAGGAGCCCAGATTGAAGAATGCAATGGTACTGTATTTATGGAACACTGAATTATCTTTGATTAAacttaatcaattaatttctGGACCTTAACCTCTTCACATGAAGTTGTGTATTTTGGACTTCAGCCCACCCTTATTATCAAAGCTTCGTATATGCCCTGCCACAGAGTCTTTACATTTATTCTTctccataaaaaatacaaattgcaatttGATCCACACATTAGAGGCAGTGTGAGGTTAAACACCCTGTGCTGGAGATTCCAGTGAATAAGACTACAGTTCTCTATCTCAGCCGTTATAAAGTCCTTCCAGAGGATTCAAACGTTTTCAATCTTAGTCCCCGACACTTCAACTTGAAGTTTCTTTATTTTCGAAAGaatcaaacaacaaaatgagtactcaaatgtttttctgttctctAGCACAGAGTAGTGTTTCTTCTGTGAACAATCGTAATACGACAAACTTAAAATGATCCCGGTTAGTCAGACTGGCAGGCTGACAATCCTATACAGCAATCAAATACTACTGTATATTTCAATTGTAAACGCTGCCCCCTTCTGACTACCAAAGCTCAATACACctcaacatttttgaaaaaaatatattttatattaaaaatatatttaaatgtatagctacaagtaaatacagttcagttcatGGGATAACACTGAAGGAGGTCAGATTAATAGTTTTCTTCAATCTATCAAATGTAAAATTCACAGCTaggtttgtgttattttaaag

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188407 lncRNA downstream 11319 11986192 ~ 11986519 (-) True G149723
TU188406 lncRNA downstream 11726 11985847 ~ 11986112 (-) True G149722
TU188383 lncRNA downstream 152121 11845422 ~ 11845717 (-) False AMCG00000336
TU188382 lncRNA downstream 152763 11841895 ~ 11845075 (-) False AMCG00000336
TU188355 lncRNA downstream 207966 11787091 ~ 11789872 (-) False AMCG00000334
TU188440 lncRNA upstream 88302 12087596 ~ 12087970 (-) True G149754
TU188441 lncRNA upstream 90713 12090007 ~ 12090266 (-) True G149755
TU188450 lncRNA upstream 91353 12090647 ~ 12098491 (-) True G149756
TU188461 lncRNA upstream 158455 12157749 ~ 12158471 (-) True G149763
TU188520 lncRNA upstream 304706 12304000 ~ 12304343 (-) True G149801
AMCG00000333 mRNA downstream 134222 11854916 ~ 11863616 (-) True AMCG00000333
AMCG00000336 mRNA downstream 149890 11840480 ~ 11847948 (-) True AMCG00000336
AMCG00000335 mRNA downstream 162683 11833159 ~ 11835155 (-) True AMCG00000335
AMCG00000337 mRNA downstream 167992 11814939 ~ 11829846 (-) True AMCG00000337
AMCG00000334 mRNA downstream 189013 11787089 ~ 11808825 (-) True AMCG00000334
AMCG00000354 mRNA upstream 2960 12002254 ~ 12004300 (-) True AMCG00000354
AMCG00000355 mRNA upstream 5812 12005106 ~ 12019181 (-) True AMCG00000355
AMCG00000356 mRNA upstream 25300 12024594 ~ 12025496 (-) True AMCG00000356
AMCG00000342 mRNA upstream 144229 12143523 ~ 12144650 (-) True AMCG00000342
AMCG00000341 mRNA upstream 160172 12159466 ~ 12161567 (-) True AMCG00000341
TU188051 other downstream 2062288 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2165705 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2231044 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2456579 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 2509229 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 82249 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 523226 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 1824660 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2570668 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3214120 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile