RNA id: TU188450


Basic Information

Item Value
RNA id TU188450
length 7845
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G149756
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12090647 ~ 12098491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAatagcaaattattttattgaccgAGAACAGGCTCTCTTGTTCACAAATATTCCTTCTCTAATGGCTAAACAGACAAATGCGTCTTGGGCTCTCTGGCAAGAGGTCAGATTCAAGGTCACATAGCTGCTGACTGGAAGCTTTTgtaaggagaaaaacaaaaaacagcagaaacaggATTCAAGTTCaatcaaaacatatatatttttttccttctaaaatcaatacacttccattttcacctttaaaatgtactttttttatgtgttacatttgcagatttattttgtatgcccccaaaagaaaaaaaaaaaaaaaagaatattctGGAATGTCTCTCATTCCACTTGTAAACACTCAGACCTGGCCACGGGGGGAAAGGGCATTTGATAAGGGGGCTGAAAAGAAAGTGCATATACAAGAAATCACTGTTAAAAAGATATAAAAATCAGTCAAGAAAGAAAACGGGTTATCGGATGAACCTGCACATCACcaacaagtttttgttttaatacacgTATATAATTTAACACCTGCATTTGCATGTTCTCTACGATTACTTATCAATTAATGACTACATTCCCTACTCATAGCCCATCAATGCTGAAAATGattgttaatatattatgtaaaaacagcttaaaaTCGTTACACATTTAGGTCTTTGGGACACTTATGTTTAGGGGAAAGTATGATAAGCACAGatcatagaaaaacaaaacaaacaaacaaataaaaaagaaataagaaaggCCCTTGCATCAATCATTCTGAAGGGCTTTTGGAGCCGTCCCTCTCTTCCACAATTACACAACTGAAAGCCAAAACCCACCAAATATGATGCTTTTCTGCAGCCCTCCCAGACAAGGGAAATTTAAGTGTGCCACTCTGAGGGGCAAGCAAGTGTAAAACggtcaataataaaatactgcaaggatccctgtaaataaataaataatcaaatcaaatcaaatcaaaatacgAAAAAATGATTGTCGAGGCGGTTAAGAGTCAAACTGTTCAAAGATCTCACCTATGCAAAGTTTGCCATTGTTTAAACAGATGGTCTGGAGGTATGTAACCAGGTTTTGTTGGGGGGGATTAATAAGGGTTAATTAGTAGGGCTGCAGCAGGCTTTAAGGGAAACGATTGTGTGTAATTGTCTTAGCAGAGAGTCCCAGAACACCGAATTCGTTAACAACGTGTAATAACTGGTCACGGTTTATACAGTCTCTTCAGAAAGACAACTGACCTGGACCACTGGACATGTAATACACATGCACGATTGAGGGAGGGTTGCTTTAAGCAGATAAGTCTTTACATACTTTCTTCTTTTAAAGAAAGTTATGTTAGTAAGTGTCCCCTACAGAAATGTACCCCACAAGTTGTTCAACATAAGCAAGATAACAATATCACAAAGTTGGTTTACAGTTTTTATAAACCATTCACCTCTCTCAAATTTAAATAGTTACGAAAAAGCAGATAGACACTCTGCTGCAGGACTCGGCGGCTGTCGTTACATGGATCCCACATGACACCCTGTGGCAACTCAGTATAAATGCAGTTACTTTTTCTGCGAACACTACAAACATCTCACTGAGCTTAAAACCTCAAGAAAACCTGACTGTGGTTTTTGTTCTGTGTGCTTGTGCCCGTGTTCTGCACGAGTCCCAGAATGTCTGGGAAGATTTGCAACTGTGTTTAAGGCAAGGCAGACGTGTAATTACAGAGGAAGTCTGAATGAACACCCTGTTTTCTTCAGTATGTGACACACTGCTCTGTGGTGTGGTGCTGAATGGGGCTTGAATTAGGCACTTTTTGCAATGCAGTACACagtttgcctgtttgttttcagtctttaGGTAATACCCACTGATTTCTGTGACTCGTCACAAGAAATTCACTTCTGGAAAGAATGGTGGATTGAGAGCAAACATTCAAacctgagaaaaaaaatggaaataaaaaaaaagtctgaactATGAGCTAGACAGGCCCTATTTCATTTAGTTCAGCACTGTGCTCTGCTACCACATGCACCACAACAGGTCTACGTCCTGGAGAACCAGGCAGAGaagggagggaaaaaagcaaactaaaagcaaaaaacaaaaaaacaaaaaatgtagtcAGCATGCATCACGTTTCATTCATGTAAGAGATGGAACAAAGCTTTAACTGACCAATgtcaaaaaagagaaaagaaacggGAACTTGGGAGCATTGAAAACATCTTAAAAAGTCAGCAATCTACCAAGCAATTCATACTCTTTAAAGACAAGTACCCTTGTTAAGGCAGTGGCAGATAAAGGCCAAAATTCAAGGCCTGTCAGGGGATCCACAGACAGAGTGCTAGATCTCTCCTGCTGGGGTCCTGTTCTCTTTAGTGTATATTCATTGCTTTAGCAGCTCGAACTGACTGCATGGTTCGTGCCTCACAGGGTGGGCTTATGGACGGCCTGCGCAGGAGTCGGCCTGTTGTGCCATGAACACTGATGTTCACGATGCCGTGTTGTGCACTCGGATTCAATGCTCAGCAGAACTCAGCCAGGATATTAAGCCAACATACAGAAGTATGGATCGGAGGGGCCACACTGCAGTAAAACCCTGCAGCAGCGGGTACAGCACACCCCCGGCAGCATGACCTGCCATCGTTAGTCGTGCGAGCCATACACCTGGTCTGCTGAAGCACTAGGATCGCTAGGACACTTTGAGATGTGAAGAACTGTATTCGAGGGCAAGGTAATTTGATTTTCCATACACTCACTACGGAGTTTCACTGAAAAGTGTCCTACATGGCAATGGtggatttgaaaatgaaaaaaaaaaaacacctcttcAACTACATTCTTcggtaacatttaaaaaaaggcagcCTTCAATAGTGTATGCATTTCCCTTAGCGCATACAACTTCATAGCCCTGTTATGAGGAACAGTTAGGTTTTTCCCTTCTCTGTGCAGTGACTACATATGCCTGAATTGAAAGTGGATACAAATGGACGTCAATGCCGTAGAATCAAAAGGTTTCTTGTGAAGgcctttattattttgtcctgtttaacatgtaattaaatcatgaaaaaagAGTTACTATAATTTTTCCCAACCTTTTGATCCACAGCAAATACACTGCCCTACGGATTAATACTTTTCCAGCGAGCAGTGAGAGAGGCGAGGTGAGGACACGGGGCTGCAGGACTGGAAGGGGCATGTCAGGTCAGTGTACCGAGTACTGGGAAGGGACTGCAAAAGGATGaggttaaaatgtttatttcacatttcatgtaACCTACTTTAACACGGTAAATTGTATGGctaaataactatttaattcTCTCAAATTTTAAATACACTGACTTTACACAGAACTTTCTTGAGTAACATAAAATAGCCTACGATCTGTGAATACGTTCAAGTCTTCATAGTGCAAGTCTGCATGTTGGATTGTGTTTGGAATGACCTGCGAGAGCAACATCGGATAGAAAAACTAGTTTAAACTCTTTCGGACACAATCGGGGAAAAGCAAGATGTGTacgttttaaaaacatgatttgagTTGATGGATTTATTATGGACAGCATGCAGCAGTTTAAATCAAACTGAGCTTCTAATTACATTGTGGATGAAGCACTTAAAATCCccatttcttaaaatacaaacctatagattaaaaaataaaaaaagaacaggcactcaaatgaaataatgaaaactgCAACCTTgtttcacagaagaaaaaacccttcagttttataaataagCTCCTGAAAGGTAAATCAGCAGGGATGCTAGctgtcagcattttttttttctttttttttttgtccgcTAAATCCCAGATAGCATGacaaagcatttaaatataacacatttacaaatatactcTATATACTCCAAAATAACTGGTTTCCATTTTTTCCTCatgattaaattacaaaatatatatgcaggCATTTACACCAGCCATGACCAAGGGCAAACAGATTTATATTTCTCCACTGGTAAGATCAGATCTAGTTATATTTCTTGGGAGGGGGTTCATGTTCACGTTTTATTCACCTACCAGTCTCTCAAATCAAGAAGAATACAAACCTTTTAATTCATATAAAAGACAAATGTGTGCATCATAATGTAGAAGAGTGCGTTATCGGGGGGGCTGTCCACAAGTCTGGGGAATGAAACGCATTAGAAATGTGGgttgtttttctccctccccAAGACAAACAATCTGATAGCAGTGCCCAAGTGTATCTTTACAccaaagaaatacaagaaacaaaaccgAAAACACTGGCTTAAGATCTTTGAGAAAGTGCTTTGTTGATACATGATTTGTAATGCCGAAAGCAATTTCTAATGACATGGCTGACATGCTAAATCCATGCTTTACATAGTAAGGAATATCATCAACTGTAGATGTAAAGctaattttaacattaaatgtttatactaacagttattatttttaaatggttgtgGGTAATTAATACTATCCAAGAAAATTACTACTAAAGAACGTTTTTCAGATGACATAAATGACAGTATAGAATGGGCTTCATTTTCAGCCTGTACTATTGTGCGTCTGAAAaagaccaaataaatacatgtttaattgtaaattacacactgcaggaaacaaaattacttttcatgacCATGAAATTCTCTCATCAGGACTTACTGCAGATAAGTTTAATTGAAactcatatattatttattccatttgtaggatgtttttataatacacaggtctgtcttttaaataatgcaaacatgCTATGCTGTGATTTTGATTTGGTTGGAAAATGCCCAGTTTTGCCActcagattttaaatatttacatttaaatcagggGACTGGGAGCTAAAAAGCATCTAAGATTATTCAGTACCCTGGGTTAAagatttcatttccttttttttgatggtttgttttgtttttgttttgttttgtctgtccaGGGCCTTGTCTGTATTGTCAAGACTAGATTACAGCCTACATTGTTCTTTATAAAATGCCAAaagatatttttgtatatcaacttcaaataaaatctttataaTGGTAATTCATTGATCTTTCAGAAATTTACATTTGGTCTGGTAAGTCTGCTGCACTTAACAGCAAAACATGATTGAACTACATGGTTCATAGGACAGGAATCAGAAGTAAAGCAcacttataaaaaaataatttaaaaaaagcgaTTATTGACATTAATGTGTGTAGTTCcccacacaataaaacattattcaaattGGTTTCAATCTCCTCAATCTCCTCATTCCCCAACCCAAGAAAAAATCCCAGTATAAAGGCTCCAATATAAAAACGTAACGGTTTGGTATTAACTTAATTCCTAGCATCCCTGGTGGTCTGCATTTGGAGGCTGTCACACATCCGTTTGTATGCAAGTACAAAGAACACATGGATTTCTTGTATTCCAGTGACTCTACACATGCAGTCCTGGAATAAACTCTGCTGTACAGGACATCTGAAGAACACTGTATTCCCGGCCAAATCAGCAGAGCTCCAATCACAACCCACACTCGTCTTACGATTACCTATTATCAGAGATGACTAGAAGTCTGTTTCCATGGGTTTGATATCCGAAGGCtatatatgaaaaagaaaaagaaaaaaaccaaAAGTGAAACATTTGGTTGCAGATAGAAAGAATAAaccactgttttgtttctttccaagTCTATCAGTGTCACTCAGTTTGAAAACGGGATTTCATTCTTGCTTTTGAAAGTAGAGCTACGTCACTGTCTACTTAAGTGTTGCTTCACAAACACCTTGCTACAGCATTGCGTGCACAAATGTAGTCCAAGTGTAACTCACTCACAAAAAAGGTGTAGAAGAGAAGCTCATATCTGTGAAATTCagtttaagaaaaagaaagtgtggTAATTTTTTAACTTCCTCTCATGAAGAATATTGTACGCAGATGGCTACCAGACCCTAGTAAAAGACATAGTAATTCTGGTagagaagcattttaaaatcactgcTTACCTACAATCCAAAAGCAACCAGTTTCTGATTCATAGTAGAAATTCAAAATAAGGGTGGGGATAATAAAAAGCTCCAGGATTTAAAACAGGCTGCTGCCCACACAAAActgagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttacagGAGGAGAATCATTCCCTGATCCCATAGGGAGGTGGGGAGAGCCTATTTTTCCGtctacacatatacaaacataaatatgcaGAATTTCTCCCGGATAATATTAGTAGCGGGGAAAGCCAAGAACACAATCATAAAACTTCTAATATAACATAAAATCAATTAGTGCAAACAAACAATGGACACGAGCGGGGGTGGGCGGGCTGGCGGGGTTTGGGGGGATAGGGGCTCCACTCGGTGACATCCTTTGGTTTCATcggggggtggggaggtggggaggtGGGGAAGGTTTGCTGCCTACATCTCTACCTGCAAGGCGTAAGGCAAGTTATGGGTTATCGGTGGGGAAGcattgaaacaaacaacaccTCCCTCTCATTGGTCAATTCACAAGCAGGGAGCCAAACCGCTCCTGTGGGGAAGCCCCAATGGACCCTGGGATAGCTGGCCCTCCCATAGTGAGTTCTGGtcagaaactgcatttctaccccccccccttttcaaaaaatcaaaacaataaacaagcaaacaaacaaacaaacaaaaaacagtactGTCAGGAGATGGATTCAGTGTTGACCATCATGTGGATTAAACCAAAACTGTCCAGTCAAGACCTGTGCAGCAAGCCCAGGGTCATGGTCTTCATCGTTTCAATATGAAAGTTCTCCAACTTTCAAAGTCTTACTGAgcgcaaataaataaattaacttacCCTACCGCAGAGGACATGGGTATatacttaaaaattaaaaagaaaaccataatCTTTGTCTCCGATTTAACGTATGCCATTAAACATTGTTGTCACACTTCTTGTTAGACATCACACTTATTGCACCTTCAAGTCATATCCTGGAATTGGTATTAATCGCAGGTATACAATACACGCTTCAGACACAACAGATAAAAATcctaaacaaactaaaaattaTACGActtcaaatcattttcaaaacataatattcatgtggttttttttttttttttttttttttcttttagtttttgtcaTTGATATGTTGCATTTTCCCACATACTATTATCCAATAACTTTTGGGTTAttggagggggcgggggggcaggtcCTGGTATGGTTGACCTGTAATTTCTACCAGTGTGAAAAGAGTGAAGTTCCCAGTGACTCTCCTGAAAGTGCCATGAGGTGGACACTCCTGTCCCAAAAAACACCCCCTTCTTTGCGTCTCCATCTCTAACCAGTAACTCCCCCAGGGTAAGGCGGGCTCCCACAGGTACGGTTTGGCACTTGTCTGCTGGcctatttcattttcagttcagGTACATCAATTGGTTTTGTCTGCTAAGTTCCTCTCTGTGTATCTCAGTGTCCGAGTCCCTCAGTGCAACAGCGGGGGCAGGCGGGCGGGcggggtggaggtgggggggggttggggggtttgCAGGCGGTGCCGGCAGGCTGGCACTCCTCGTCGCGGGGCAGCGCTACTGCAGGTTCTTGAGGATGCGCCCATAGCGGAAATCGTAGACGTGGCGACAGAGGAACACCAGGTCCGGGTCGATGCTCATGGGGACTCGGCGGTGGGCCGGGATGGCATACTCTGGGGAGGGCGGCACCACGGGCATACTTTCAGGGAGACCCTCCCCGCGTCGCTTCACCAAGGCACAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188441 lncRNA downstream 381 12090007 ~ 12090266 (-) True G149755
TU188440 lncRNA downstream 2677 12087596 ~ 12087970 (-) True G149754
TU188415 lncRNA downstream 91353 11997838 ~ 11999294 (-) True G149730
TU188407 lncRNA downstream 104128 11986192 ~ 11986519 (-) True G149723
TU188406 lncRNA downstream 104535 11985847 ~ 11986112 (-) True G149722
TU188461 lncRNA upstream 59258 12157749 ~ 12158471 (-) True G149763
TU188520 lncRNA upstream 205509 12304000 ~ 12304343 (-) True G149801
TU188521 lncRNA upstream 246918 12345409 ~ 12345710 (-) True G149802
TU188697 lncRNA upstream 719289 12817780 ~ 12825281 (-) True G149942
TU188768 lncRNA upstream 844095 12942586 ~ 12946121 (-) True G149994
AMCG00000356 mRNA downstream 65151 12024594 ~ 12025496 (-) True AMCG00000356
AMCG00000355 mRNA downstream 71466 12005106 ~ 12019181 (-) True AMCG00000355
AMCG00000354 mRNA downstream 86347 12002254 ~ 12004300 (-) True AMCG00000354
AMCG00000333 mRNA downstream 227031 11854916 ~ 11863616 (-) True AMCG00000333
AMCG00000336 mRNA downstream 242699 11840480 ~ 11847948 (-) True AMCG00000336
AMCG00000342 mRNA upstream 45032 12143523 ~ 12144650 (-) True AMCG00000342
AMCG00000341 mRNA upstream 60975 12159466 ~ 12161567 (-) True AMCG00000341
AMCG00000343 mRNA upstream 75144 12173635 ~ 12181462 (-) True AMCG00000343
AMCG00000348 mRNA upstream 267974 12366465 ~ 12379163 (-) True AMCG00000348
AMCG00000360 mRNA upstream 306113 12404604 ~ 12414806 (-) True AMCG00000360
TU188437 other downstream 7433 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2155097 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2258514 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2323853 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2549388 9540611 ~ 9541259 (-) True G149341
TU188588 other upstream 424029 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 1725463 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2471471 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3114923 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 3190861 15289352 ~ 15291236 (-) False AMCG00000475

Expression Profile