RNA id: TU188461


Basic Information

Item Value
RNA id TU188461
length 723
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G149763
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12157749 ~ 12158471 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccccgtccccccgtGTAANNNNNNNNNNGCCAGGTAGTAGCTGCAGTTTGAATTTAAGGTTATCCCTCTGAAATGACGCTGAAACTTCAAATGCATTAATCAGATTTATACATACGATGTTCAGTGGATGTTCAGAATAACCTCTATGTGTAAGTGACTGCAGGAATATGTTAGATTGAGCAGTGGGAGAGTTCATAttgtaaagaaattaaaacatttggctACCTAAATTCTTCATCTCCATTTTACCCACACAACATGTTAGCTTTTGTTACCCAATTCTTAAACCTGATCCATCACTGTATTCACTGCCTGCCTTTACATATTCActcttattttcagtttctgacATTGTCTGATCATTCGAAAAACTGCACAGTATGAGATAATAGCTGCACTCAACTGTAATGTTTGGCTACCAGACAGTTGTTcagtaatgtttatttaatttgagttgAATATACCGTGTAAAGGTAGTTAAACAATAACTTTATGAAAACTGCTGCATTTTGAGTTGAACATGGATTTCATGGATCACTGCAACTTGAAGCACTGACATTTACTGCACTAATCAGAGTAATCTAATTTGAAACTGATAGCATAATCTCTTAGAATTCAATAATAACCTTTTATTTCAATCATAAATAAACCCAGaactaataaacaaaaacaaagatgtcTTAAGGCTGAAAGTCTGTTCACTATGGAATAATTGTCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188450 lncRNA downstream 59258 12090647 ~ 12098491 (-) True G149756
TU188441 lncRNA downstream 67483 12090007 ~ 12090266 (-) True G149755
TU188440 lncRNA downstream 69779 12087596 ~ 12087970 (-) True G149754
TU188415 lncRNA downstream 158455 11997838 ~ 11999294 (-) True G149730
TU188407 lncRNA downstream 171230 11986192 ~ 11986519 (-) True G149723
TU188520 lncRNA upstream 145529 12304000 ~ 12304343 (-) True G149801
TU188521 lncRNA upstream 186938 12345409 ~ 12345710 (-) True G149802
TU188697 lncRNA upstream 659309 12817780 ~ 12825281 (-) True G149942
TU188768 lncRNA upstream 784115 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 788845 12947316 ~ 12949350 (-) True G149995
AMCG00000342 mRNA downstream 13099 12143523 ~ 12144650 (-) True AMCG00000342
AMCG00000356 mRNA downstream 132253 12024594 ~ 12025496 (-) True AMCG00000356
AMCG00000355 mRNA downstream 138568 12005106 ~ 12019181 (-) True AMCG00000355
AMCG00000354 mRNA downstream 153449 12002254 ~ 12004300 (-) True AMCG00000354
AMCG00000333 mRNA downstream 294133 11854916 ~ 11863616 (-) True AMCG00000333
AMCG00000341 mRNA upstream 995 12159466 ~ 12161567 (-) True AMCG00000341
AMCG00000343 mRNA upstream 15164 12173635 ~ 12181462 (-) True AMCG00000343
AMCG00000348 mRNA upstream 207994 12366465 ~ 12379163 (-) True AMCG00000348
AMCG00000360 mRNA upstream 246133 12404604 ~ 12414806 (-) True AMCG00000360
AMCG00000361 mRNA upstream 264532 12423003 ~ 12428292 (-) True AMCG00000361
TU188437 other downstream 74535 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2222199 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2325616 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2390955 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2616490 9540611 ~ 9541259 (-) True G149341
TU188588 other upstream 364049 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 1665483 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2411491 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3054943 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 3130881 15289352 ~ 15291236 (-) False AMCG00000475

Expression Profile