RNA id: TU188588


Basic Information

Item Value
RNA id TU188588
length 431
RNA type TUCP
GC content 0.42
exon number 2
gene id G149847
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12522520 ~ 12542310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggctcagcagatacaatctcggcagcacaggttattcaaagggacttagataatattcagttgtgggccgacacctggcagatgaaattcaatgtggacaagtgcaaggtattacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcactttctccatccaaacaatgtggggaagcaataaaacaagcaaacagcgtgttaaggtatattgtcaaaagtgtagaatttaaaacaaggacagtaatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagaacaaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188521 lncRNA downstream 176810 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 218177 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 364049 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 424029 12090647 ~ 12098491 (-) True G149756
TU188441 lncRNA downstream 432254 12090007 ~ 12090266 (-) True G149755
TU188697 lncRNA upstream 275470 12817780 ~ 12825281 (-) True G149942
TU188768 lncRNA upstream 400276 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 405006 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 407615 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 424650 12966960 ~ 12968715 (-) True G150007
AMCG00000364 mRNA downstream 5321 12489183 ~ 12517199 (-) True AMCG00000364
AMCG00000362 mRNA downstream 51027 12460630 ~ 12471493 (-) True AMCG00000362
AMCG00000361 mRNA downstream 94228 12423003 ~ 12428292 (-) True AMCG00000361
AMCG00000360 mRNA downstream 107714 12404604 ~ 12414806 (-) True AMCG00000360
AMCG00000348 mRNA downstream 143357 12366465 ~ 12379163 (-) True AMCG00000348
AMCG00000363 mRNA upstream 6920 12549230 ~ 12554739 (-) True AMCG00000363
AMCG00000378 mRNA upstream 284283 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000379 mRNA upstream 290890 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000374 mRNA upstream 343434 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000373 mRNA upstream 369862 12912172 ~ 12919957 (-) True AMCG00000373
TU188437 other downstream 439306 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2586970 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2690387 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2755726 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2981261 9540611 ~ 9541259 (-) True G149341
TU188948 other upstream 1281644 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2027652 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2671104 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2747042 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 4265782 16808092 ~ 16834326 (-) True G150729

Expression Profile