RNA id: TU188697


Basic Information

Item Value
RNA id TU188697
length 1030
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G149942
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12817780 ~ 12825281 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTAGTCTTGGAATGCCAGTTATCAGTCTAGGTAGGGTGGCCGAATACCAGCGATAACCAAGGTCTTTGAAAGCAGCtgcaaatattttttgcagatccattttcttccatttagtTTAAACATCTGGGTAACAagtttaaaatggtttcagcTATTCAGGTCTGATGGTTGTTGCTAGGTTGAGCAACCACCTGCAGAAGTGTTAATGAGTTGAGCAAAAGGGTAGTGTGAGAAAAGTGTCAgtctaggtgtgtgtgtgtgttcgcgTTCTTAGTCCATTAGGActgaccttaaaaaaaaaaaaaaaagtccacttTGCATTAGTTAGGAGTGACACCACAGAATGGAGACATTTTATTATGGGTGGGTAACAATACCAGTACtaaacatttccttttcctttcacaaacatacaaattcCTTCTTTAAAAGCACCCTCGCCATTTGACTCTTAATCCTTCCATCACATACCATCTGCCAACAACATTCCTCAGCCTCTCTAAACCTCTTTCACAATGATTAACATTTTTCTCTATATGGTAATAATGCATCTAAACACtaatctattatttttttatttgttgctttTATGATCCGTTTCTTCTTTAGATAGCGGTTCAGCGTATTCGCTGCCATGCGGTTTACTCGGTGCAGAGCACGGCCACTCCGCGCTCGTAGAAGATGTGGGGGTCCTCCTTGGTGTCGAAGTCCACCGTGAAGATCAGGTCGGCGCGCGTGAAGTTCAGGCCGTTCCTTCCCCTGTGGCTCCCCTACCTGGTTGAGAGCCTCCATGGTGAAGTAGATGCTGCTGCAGGCGGTTGAGAGAGACAGGTACTGCTGGGACACCGACTCCACCTCCTGCATAACGATGTCCGTCTCCTCCACCTTGCGTGTCACCTCCGCCGCTTCCTTCTTCAGGTTCTCCAGCGTGGTGATGATGGTGTCATCGTCCAGGATGCGACCTTTCACCTCGTTCAAGGCCTGCAGCAGGGATTTCTCAAGCTGCCGGAGACGGAGCTGGAACTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188521 lncRNA downstream 472070 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 513437 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 659309 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 719289 12090647 ~ 12098491 (-) True G149756
TU188441 lncRNA downstream 727514 12090007 ~ 12090266 (-) True G149755
TU188768 lncRNA upstream 117305 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 122035 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 124644 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 141679 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA upstream 141679 12966960 ~ 12968715 (-) False G150007
AMCG00000363 mRNA downstream 263041 12549230 ~ 12554739 (-) True AMCG00000363
AMCG00000364 mRNA downstream 300581 12489183 ~ 12517199 (-) True AMCG00000364
AMCG00000362 mRNA downstream 346287 12460630 ~ 12471493 (-) True AMCG00000362
AMCG00000361 mRNA downstream 389488 12423003 ~ 12428292 (-) True AMCG00000361
AMCG00000360 mRNA downstream 402974 12404604 ~ 12414806 (-) True AMCG00000360
AMCG00000378 mRNA upstream 1312 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000379 mRNA upstream 7919 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000374 mRNA upstream 60463 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000373 mRNA upstream 86891 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000372 mRNA upstream 96102 12921383 ~ 12932189 (-) True AMCG00000372
TU188588 other downstream 275470 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 734566 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2882230 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2985647 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3050986 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 998673 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1744681 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2388133 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2464071 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3982811 16808092 ~ 16834326 (-) True G150729

Expression Profile