RNA id: TU188768


Basic Information

Item Value
RNA id TU188768
length 3536
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G149994
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12942586 ~ 12946121 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACGGGTATGAGTCATTGGGTGTACTAGGATAAAAAGATTTGATTTCAAAGTTGTCATTTTCTTCCAGCTATTTAGCATACATTATCAACTTAAATGAGAAGGCCTAGgacacaaaaaaagcatttccaaCAGATACCTTGCAATCACATAAAATCACTTTACAAGCTGTTACATGTCATTTTGAAACAACCAATTACCAGCTGAAAAGTGCTAGTACTGCTGACCTTTTTTTGTAAGGCGAGAGACAATACAGTGCTTTCAGATCTCACATATTTTGATACCTTTCAAAATGCTACGGTTTACTgttgcatttttcaaaacatgacTGACAGATGCTCAATAGAAACAACATTGATTTTTCCAGACAGCAATGCTCAAGCCTGCATATCATatcaattcaaaaataattcTATGGCCAGGGAAGGGAATGGGTCTGTAACTGGATTGTCTACTTTGGGTGAAAATGTACATGTTCAGAATGAGTAATAAATATATCAGTAATGTACATGTTTTACACAGGGATGCATTTCCCATGTATATATGGTGGAGGGATTagtttgcactttgttttgttctttttaccCTAACTCCCCTCTACATCTGTATGTCTTGAGGTAAGTGCCACTTTaatgctgccccccccccctctgcacATAAACTGGAGAACTAAGGACCAGTTTGCAGTCTCTGAATCTTGTCCCACTTCTATACTTTTGCTCATCCAGGCAATGAAATCAGGATGACACAGGTGTTTTATTCGATGGCAGCTGCTTTCTTTCATGCAAGCTTGCACAGTATAAATTGACAGTAGACGTTAAAGGGAAAAACACTGTTTTCATGTAGCTTGTTGTAATGCATCTAATTTGGACAATCTGTGATtacactgtatatttaattgcatgttcAATCTCTTCACAATTAATTACCACTCTACAGCTCATTAACCTAAGACACTGGCTCAAGTAACTCAATTATGTGGCCAGTGTCAGGTAGGCCTCGTTAACAAATAATTATCTGTAATTGTTCTTATTGCAACTTTATACTCTGGATGTGATTGTGGCATTACTGGTCTAGCTGGCCATGCTTTTACATCTACTGACAGAGGGAAAAGGCGCATTATATTGCACTCAATGGAAACCAGGACATTGCAAACTGAGTTTCACAATGGCAAACTTCCATTATGATGTACCTCGCCTTGGCCATGCACATCACAGTCTGCGGTCACCTCGTCCCTCTCCGAAGTGAATGGCGGGACATCGCAGTTGTGGTTTGGGGGTTCAGACACATCTGGACTCTCATCAATCGCCGACTCTGTCAATTCAGAAACCAGCTTCAAGCCTTCGGATACAGTGACACATGCTTTATTTTGGACCTGTAATGAAGGGTGGTTTGTTACAGCTCCAGGGGCATCTGGGATACTGCTTTCCTGCCATGTTGGAAGTTGAGAGGTGGCGGTTTCGTGTTCACTGCCGTCTCCAGTTGGGGCTTCGCTCACCACCTGCTGCGGGCCGCCGGCTCCGGCTGTCGGGTCCTGCTTCAGCGGCAACACGGGCAAAGTGACAACCAGCTGTCTGGTGCCTTTAATGAATCTGGCATGGCCTTGCTGTTCGTCCACGGGGTAAGGTAAAGTCACGTCCAGCCTGTACGCCGGTTTCTGGGATTGTAAGAGCAGCCGGTTCTCGGTCACATCCAGGCCCGTTTCCCCCGCGGAGCTGAGCAGAGGCAGGTCCACGGTGATGACGATCTCCCGGGGTCGGGGACTGGGGGCAGAATCGCGGGAACACCTGTAATCTTGCAAGTCAATGTACGACCTGAACTTCATCTTATAATTTGGTTCCGTAGGTGGACCGGGTTCTGCTGGGTCTGGGGTGACTTTCTCCGTTTTACCGTCCACGTATTTTGATGgcactgtgtgtttctgtgtgttgttgttgttgttgttgttgttgttataggGGTACGGGAACCGCAGAGGGTCATTCGGGTCAGCCGGTTCCTTTTCGGTCACTGTGTCCGCTAGTGGTTTGCGAAGCACTGCGGGATGGGGGACCCCCTTGTACTTCATTTTCAACACCTTGACGTTTCTCTCATCTAGTTGGACATTGTAGTGTTCCTCAATGGCGTCCATCGCCGTCTTGTCAATCATTTTCATAAACCTGTCGTTTTTCCCGGCCATGTGAAGCGTGTCGGGGTGGAACACGACGTCGTATATCCAGTGCTTGTTACCCTTGGGGTCCATTTCTTGCCTCCCCGGGGTCAAGCTGTACGGCAGGGTCCAATGCATCCCCTCTGCCGCATCACTCTTCCTGCACCCCGGCTTGTGGATGAGGTGGTTGGTGCAGATGTTGATGAAGCACTTCTGCCCGCCGCCCACGCTGGTCTTCAGGGCTCTGGCCGGCGCGGGGTGGATGAATCGGACGTCCATGCCCCTCTCCTGCTCCATCTGCGCGATTTCCTCCTCGTACTTCTTCTTGTTCTCCGGGTTGGAGATCTCGTCGGCATATTCCCACAGCATCTGCCGGAATTTCTCGTCCTTGAACGCCTTGCTGAAGCGGTCCACCTCTTCTGGGGTTAAATTTAAATCTTCATATTTCGATCCGGGCTCCATGGTTGGTGTTTCGTTGCAGACACTGGAGACGTTCAAACTTTGCGTCCTTTCCAAACGAACTGTATCCCTCCGCTGAGTTAGTGCGCATTCGTATATAGATATCTTGGATTAGAGAGAGAAATGACGATTTTAAGCACAATAATGACCACATGAACACTGTTTAAGCATTGTCTACTTACACAGTTCACGGTGCTGTGTTGCTGTAACCCTGGTGTCGGTCTTTGAAATGGTAGCTAACAAACAAAGCGGTTGTTAAGGCTCAGACTCCAACAGATCAACTGCCTTACAAACTAAATACACTATAAACTGTACTAGGTGTCCTTTTTGATCAGATATAtagtgcaaaaatataaaacttttgctattattattattataaacgcGTAGCTTTCAGGAAATATGACTAATCTCATACCATTATGCACTggcaattcttatttttttattcttctatctctactattattatcatttattgtTTACAAGTACTAGACAAACATGCATGTACTCCTGTGGATACTGCTAACAACTGGAGCTATAATtgtagaaaatagaaaattattaatttcccaGATGAATCATCTTACAGGActgttaatcaattaatcaaattacaaCATACACTTTGATATATATGTTAAGTGATGTAGTCAAATAGATAATTGAAACTAGTAAAACCATTCCACTTTAATTAACTCAATTTTTGATTGAAAGTTTATAAActcagtgtgtttttatatataatatataacctTAGGCAGAGTTTGGCGTGCCAATGGGAATTCAGTACTTACTTTCATATAATCAATGAAGTTATAATTTTTCCATATTTcttattccatttattttccaaatgtatgtTATAATAGCTGAACATGTTCTTGTGaatgtaaattgttttatatacattggAATTCAAATGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188697 lncRNA downstream 117305 12817780 ~ 12825281 (-) True G149942
TU188521 lncRNA downstream 596876 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 638243 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 784115 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 844095 12090647 ~ 12098491 (-) True G149756
TU188769 lncRNA upstream 1195 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 3804 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 20839 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA upstream 20839 12966960 ~ 12968715 (-) False G150007
TU188787 lncRNA upstream 20839 12966960 ~ 12968715 (-) False G150007
AMCG00000372 mRNA downstream 10397 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000373 mRNA downstream 22629 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000374 mRNA downstream 46136 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000379 mRNA downstream 95365 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000378 mRNA downstream 112436 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000375 mRNA upstream 4754 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000371 mRNA upstream 8865 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000382 mRNA upstream 191665 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000383 mRNA upstream 200409 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000389 mRNA upstream 658008 13604129 ~ 13607997 (-) True AMCG00000389
TU188588 other downstream 400276 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 859372 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3007036 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3110453 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3175792 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 877833 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1623841 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2267293 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2343231 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3861971 16808092 ~ 16834326 (-) True G150729

Expression Profile