RNA id: TU188769


Basic Information

Item Value
RNA id TU188769
length 2035
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G149995
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12947316 ~ 12949350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGTACAAAGCTTTTTTGTAAGACATGCCATATTCACTACACTGCACCTGGAGTAAAGTTTGTGCCATTATTCTCCAGGGGTAGCCACTCTTCGCTGCCAATTGCCAACCAGCGTTAGAATTCCAAAAAGGAAGACATTTTGTCTCTTTGTCTACCCTTCACACTTAAACCTTGTGACTGGATCAACTACAAAGGTCAGTTCGAATTTGTAAGAACAGCAAACGGATCTTCCTGAGAATCACTGCCCCAGCGCACGGCTTGTGCTTCAGCAGAGCTCAGAGTTGATGAGCTATATCACAAATCTAACTTTAGTACACTGCTTTAATCATTGTCCGCAGATATCTTACaaaaagtgcattttcagtCCAGACGAGTCTTGAAAACTcaattttatagttttttctatcctgcagagaaaaaactgaaaaaaagccTTTTACTCTCCCTCAGTGCTGGCAGGCTTTCATCCCCCCTCATTAttataaaaggagaaaaagatCCATTAATGTTCCAAACTCACAAAGAAACACCCTGAGGAGAAAAAGTCTAGAGCTTTGTGCAGGTTCACCAGCACCTCTAACCAGACCGGGCTTCCTTCTCTGTGATTGATGTGCTCTTGGGCCCAAGCTCCTGCAGCAAGTTCTGCCTAACGAGGGAGTAATTCTAGAATGACACAAGACAGGAAAGCACTCCGAAATCGCACAGCAGTAACCGAACTTGATTCAGTGAATGGCCATATAGTGTGTGTAGCAGCAACAAATTAACTGCTGGAAAGGTAGCTGagggacaaaaaaaataaatgcagttggCACTTGACAACAAACAAATGGCAGTCTGACGCTACGATGTACTcattttgctttggtttttattttgctaccAATATCACAGTTAGGCTTGTAAATCCTGTAAGAGCAGCTGTCCTTGAATGCAGGCtgggaatgtttttttcctctctcctgtAATTAGCAAGGACTGCTCTTCAAAGTAAACATGTAGTGATCTGAAAGTAAATTGTAAAGCTGCTTGGGAACTCACGACAAATAATTcacagaataaatgtatttaagcagCTCTACAGGAATGTCCAGAGAATACCTATAATGGGAAAAAGCTTCTGAATGTACTggaagtttttctttttaattttcctgtgcttattttaaatgttaaataacacAGGCAGGCAGAAACGGTTTGAAAACACTCATTAACCAACACGAAATGCAGAATGGCTGTGAATCCTGTATCAGTTAGATTAATTCTTATTTAATCGTAATGCAAACACTTATATATTCACAACTGAATAACTGCACGAAAACAGCATTAATCCAGCTCATATAAAAGGGAGTTGTGAAATGAGAACGCAGCTGAGGTGGTGTGATTACTAATGACCTCAACTTCTCCATCGATAGTGTTCACTTCCCTAATGATAGCTGGGGCTGGCACGCTCTCCGGGAACTCAGTCTCTTGCTCGGTGGGGAGGTCGTCTTCATCAAGATCTGGCACATCTGCTTCTGCGACCTCCTCTTTGAAACACACCTCTTTCCTGGCTGTTTCACCTGTGCTGGCAACATCTAGTGTGCCTGTGGTCTGCTCCCTTGTAAAAGCAGGCTCATCGGGATGCAGATGGCCAGCTACGGGCTCTGTACTTTGTTCAGTTATGTCTGGACTGGGACTCCGCTCTGAGCTCTGAGCCCCAGGCCAGCATACTGCGAGAGAGGCGGGGTCTTCGGCCGGTCCCTGTGCTCTGGGATCTGTCCCCGTCTCTGGGATAGCCGCTCCGGGGGATGAGTTCTCCTCTCTCACAGTGCTGTCCATATTAGAGTGGAAGACAGATGCAGCTTTTGATTTTCCCCCTGgtttattactttgtttgtcCTGAGATTGATGAGAGATGTCAGCATCCCTCTGaaagaaatgttattaaaacGGTTAATCATCCACAAAGAAGTAGGGCCTAGAAGCATGAACAAGTTCGTAAATGCACAATGTACAACTGCGGTTAAATGTTAATGCTTTGCAATTTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188768 lncRNA downstream 1195 12942586 ~ 12946121 (-) True G149994
TU188697 lncRNA downstream 122035 12817780 ~ 12825281 (-) True G149942
TU188521 lncRNA downstream 601606 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 642973 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 788845 12157749 ~ 12158471 (-) True G149763
TU188770 lncRNA upstream 575 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 17610 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA upstream 17610 12966960 ~ 12968715 (-) False G150007
TU188787 lncRNA upstream 17610 12966960 ~ 12968715 (-) False G150007
TU188866 lncRNA upstream 650484 13599834 ~ 13682131 (-) True G150072
AMCG00000372 mRNA downstream 15127 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000373 mRNA downstream 27359 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000374 mRNA downstream 50866 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000379 mRNA downstream 100095 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000378 mRNA downstream 117166 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000375 mRNA upstream 1525 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000371 mRNA upstream 5636 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000382 mRNA upstream 188436 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000383 mRNA upstream 197180 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000389 mRNA upstream 654779 13604129 ~ 13607997 (-) True AMCG00000389
TU188588 other downstream 405006 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 864102 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3011766 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3115183 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3180522 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 874604 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1620612 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2264064 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2340002 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3858742 16808092 ~ 16834326 (-) True G150729

Expression Profile