RNA id: TU188783


Basic Information

Item Value
RNA id TU188783
length 1504
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G150007
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12966960 ~ 12968715 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTACAAAAATTATCAAAAGGCAGTCATTACAATGGATTTACAAATTCTGCTTATTACCAGGCCAAAATAGACCAATCCTCAGAAGTGCATGCAACACAAATGCTCTTAAAAAGACCTATAAAACCTTAGAACTGTGTATGTGCAACTCTGTAGCCACATGACTGAATTcagcacttttattttgtaaccgTTAACTTTCTGATGGAGAATTTTACATGAACACAGCTCATCCACCTGCGCAAattctgaattacaaatgaagtATTctagcattcattttaaagcaccTGGTACACAAGTTTGACAACACAACCAGACAAAGCAGAATAGCTCCCATCAAGTCTAGGTACGCTCAGAAATTTGATCTAGCACATAGCTTGAATGTCCAGTCTTTTCTGATCGAGATACTTTCTAAAGTTCATTATCAAATGAGACTTGAAAAGCAGCAGGTTAAACCTCAAAtcagattaaaattaaagtgtCAATACTTATTCTACAGTAATGAGCAAAAGGAAACACTGCCTTGTGGAAATTGaggcttttaatattttaatttccatgttttttAGATTTCTGCAATTTGATGCAAAGCTAAAATTGTGCATCTGCAAGTCTTGGGCCATAGGATGCCAGACAATGAAATATACTGGCAGGataccattttaaaaaacatgagGCAGGATCACatactgaaaatgtttattgaGTATCACAATGTAACCAATAGAAAGTCAATCTGTCTTGCGGTCATCTTGTCCACCTTCAGTGTTGATTCCCATTGCATCTCCGCATAGTTAGTCAAGCTGCAAAAGCCGATGTCTTTAGCATACTGTCGGAAGCACTGGCGGCACATGTTCAGCCCATATTTACGGATCAGACCGTGTCGGTTAGAGCATACTCGGCTaggaaaaattaaaagcatCCACAATCAAACCACCATTCACAgcaaacaatatacacacatcTTTAACAACGCATCCAGATCCCCATTGCATGCCTTCCGCGTCCAGTGCAGTAGGACACCTACTCCCTCCCTCCGCCATCACAATGCACACCGTGTTAATAACTGCCAAacctttttcccccccacacaaagTTTTTTACAATGCAAAGTTAGAAATACAATGTGCCACCACGTCAATAAAGGTTTATTTAGAGTTTGTAGGTAACAGCTATATAACCGCACAATGTCAGGTATTTTAACAGCCTGGCCTACTCGGCGGCAGAGATCCGCCATATTACGGCAGCACATCCCATGTGGACCGGCCTCGGTTTATTGTAACTCTCGCTGGCGGCTCCATCTTTATTCTGATTCTCCCTCTGTGTTTTGGAAATCATTAAAAACGTATATATTAAGGGATAACTAACCAGGATCGGGATCCCTGGCCGAATTTTCGAGGGTGACTCCAGTAGAGCTGCTGGTGACCCATCTTGTCTCTATCGCTCGGATATCGAAAAGGAAGGAGCTGAGGCGCGCATGTGCAGATCAAACCCCGTCCCCGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188770 lncRNA downstream 16832 12949925 ~ 12950128 (-) True G149996
TU188769 lncRNA downstream 17610 12947316 ~ 12949350 (-) True G149995
TU188768 lncRNA downstream 20839 12942586 ~ 12946121 (-) True G149994
TU188697 lncRNA downstream 141679 12817780 ~ 12825281 (-) True G149942
TU188521 lncRNA downstream 621250 12345409 ~ 12345710 (-) True G149802
TU188866 lncRNA upstream 631119 13599834 ~ 13682131 (-) True G150072
TU188879 lncRNA upstream 680678 13649393 ~ 13650005 (-) True G150083
TU188880 lncRNA upstream 698847 13667562 ~ 13668139 (-) True G150084
TU188882 lncRNA upstream 719056 13687771 ~ 13688177 (-) True G150086
TU188915 lncRNA upstream 771081 13739796 ~ 13746130 (-) True G150115
AMCG00000371 mRNA downstream 2754 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000375 mRNA downstream 14784 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000372 mRNA downstream 34771 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000373 mRNA downstream 47003 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000374 mRNA downstream 70510 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000382 mRNA upstream 169071 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000383 mRNA upstream 177815 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000389 mRNA upstream 635414 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000390 mRNA upstream 657668 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000391 mRNA upstream 715312 13684027 ~ 13687008 (-) True AMCG00000391
TU188588 other downstream 424650 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 883746 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3031410 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3134827 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3200166 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 855239 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1601247 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2244699 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2320637 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3839377 16808092 ~ 16834326 (-) True G150729

Expression Profile