RNA id: TU188879


Basic Information

Item Value
RNA id TU188879
length 537
lncRNA type intronic
GC content 0.45
exon number 2
gene id G150083
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13649393 ~ 13650005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttagcagtgagagacagaataacaacaaaaaaatccagaaaaacgcatttccaaaaaagttataaattgatttacatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaaccctcatgctggaatacccatccatgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacaagGCCCcatccatcgtccctttgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttcattggcaaacttcagacgggcctgtacttgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188783 lncRNA downstream 680678 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA downstream 680678 12966960 ~ 12968715 (-) False G150007
TU188787 lncRNA downstream 680678 12966960 ~ 12968715 (-) False G150007
TU188770 lncRNA downstream 699265 12949925 ~ 12950128 (-) True G149996
TU188769 lncRNA downstream 700043 12947316 ~ 12949350 (-) True G149995
TU188880 lncRNA upstream 17557 13667562 ~ 13668139 (-) True G150084
TU188882 lncRNA upstream 37766 13687771 ~ 13688177 (-) True G150086
TU188915 lncRNA upstream 89791 13739796 ~ 13746130 (-) True G150115
TU188919 lncRNA upstream 106511 13756516 ~ 13761597 (-) True G150119
TU188988 lncRNA upstream 353071 14003076 ~ 14019526 (-) False AMCG00000409
AMCG00000389 mRNA downstream 41396 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000383 mRNA downstream 422958 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000382 mRNA downstream 502870 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000371 mRNA downstream 685187 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000375 mRNA downstream 697217 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000391 mRNA upstream 34022 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000400 mRNA upstream 41924 13691929 ~ 13693526 (-) True AMCG00000400
AMCG00000399 mRNA upstream 44673 13694678 ~ 13701429 (-) True AMCG00000399
AMCG00000398 mRNA upstream 57778 13707783 ~ 13729942 (-) True AMCG00000398
AMCG00000397 mRNA upstream 96174 13746179 ~ 13752105 (-) True AMCG00000397
TU188588 other downstream 1107083 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1566179 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3713843 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3817260 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3882599 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 173949 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 919957 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1563409 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1639347 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3158087 16808092 ~ 16834326 (-) True G150729

Expression Profile