RNA id: TU188880


Basic Information

Item Value
RNA id TU188880
length 512
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G150084
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13667562 ~ 13668139 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTGGGCACATCCACTTGATGCCCCCTGCCCACGTCCTGCCAGTAGTGCAGCAGCCtgtcctgctcctcctcctccatggGCTCGGCTTCGTCCTCCAGGGAGATCATCCCCAGGCGCGATTCCGATTCCGTCCCGCCGCCCTGCCCCCCACCGCCATTTAACCGACAGCCTCCCCTATCCATGGCCTGGGAACCGGTGTGTGAATGGATATGATCAATGCACCCGGATCTCAAGGCGGACTATTGCTATGTTCAGATCAAGGCTGCAGCGGTTTGTTTCCACACTTGTCTCTCTTGCAACTGCAGCTAAACTAACAAAATAAGACAAACTTTCAGCCTTTTAGTTTACTGATCATGTCTGGCACCCTGGCGTTTCTGCCTGGATTGATTGTATTGATGCACAGTGATAAATGCGCAGAGAGGAAAACGAACAGGCTGATGCCCACCGACTGCCCACCTCCCGCCCGTAAAGACGGCAGCCCTGCTACGGGTGACAGTGCAGCTCCTCCA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188879 lncRNA downstream 17557 13649393 ~ 13650005 (-) True G150083
TU188783 lncRNA downstream 698847 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA downstream 698847 12966960 ~ 12968715 (-) False G150007
TU188787 lncRNA downstream 698847 12966960 ~ 12968715 (-) False G150007
TU188770 lncRNA downstream 717434 12949925 ~ 12950128 (-) True G149996
TU188882 lncRNA upstream 19632 13687771 ~ 13688177 (-) True G150086
TU188915 lncRNA upstream 71657 13739796 ~ 13746130 (-) True G150115
TU188919 lncRNA upstream 88377 13756516 ~ 13761597 (-) True G150119
TU188988 lncRNA upstream 334937 14003076 ~ 14019526 (-) False AMCG00000409
TU189048 lncRNA upstream 483449 14151588 ~ 14153846 (-) True G150219
AMCG00000390 mRNA downstream 15427 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000389 mRNA downstream 59565 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000383 mRNA downstream 441127 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000382 mRNA downstream 521039 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000371 mRNA downstream 703356 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000391 mRNA upstream 15888 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000400 mRNA upstream 23790 13691929 ~ 13693526 (-) True AMCG00000400
AMCG00000399 mRNA upstream 26539 13694678 ~ 13701429 (-) True AMCG00000399
AMCG00000398 mRNA upstream 39644 13707783 ~ 13729942 (-) True AMCG00000398
AMCG00000397 mRNA upstream 78040 13746179 ~ 13752105 (-) True AMCG00000397
TU188588 other downstream 1125252 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1584348 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3732012 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3835429 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3900768 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 155815 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 901823 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1545275 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1621213 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3139953 16808092 ~ 16834326 (-) True G150729

Expression Profile