RNA id: TU188882


Basic Information

Item Value
RNA id TU188882
length 407
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G150086
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13687771 ~ 13688177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGTTAGCAGCGTTGTCTTGCAAAAATGCAATGATGTCTTTCTTGGGTAGATCATCACTTTTCAGCTGCTCTTCGCTCCATTGCTTGCTTGGTTCAGCGGCCATCTTACACCTCAAGTCGATGACCTTTCACCCCTCACTGTGGGAGGAGACAGGAAACATGTGCTTTGGCTTATTTGGCTTTCGGTGCAAACAGTGCCTAACAAAAAAACACGCCCGTATTTGTTTCAGGTTCTAGCAGGTACTCGTTAATTAGTCTGCAAAGTGTCAGTGTACATATGTGTGCTGGTCCTCCGCTGTGTACTAGTACTAGCACAATAACTAACAGAATAATACAACAGCCATAGCCATAAATAGGATTTTCGTGCAGTTTCCTGACGTGTGTTCAGTCGTATTGCAGTTTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188866 lncRNA downstream 5640 13599834 ~ 13682131 (-) True G150072
TU188880 lncRNA downstream 19632 13667562 ~ 13668139 (-) True G150084
TU188879 lncRNA downstream 37766 13649393 ~ 13650005 (-) True G150083
TU188783 lncRNA downstream 719056 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA downstream 719056 12966960 ~ 12968715 (-) False G150007
TU188915 lncRNA upstream 51619 13739796 ~ 13746130 (-) True G150115
TU188919 lncRNA upstream 68339 13756516 ~ 13761597 (-) True G150119
TU188988 lncRNA upstream 314899 14003076 ~ 14019526 (-) False AMCG00000409
TU189048 lncRNA upstream 463411 14151588 ~ 14153846 (-) True G150219
TU189121 lncRNA upstream 557640 14245817 ~ 14250061 (-) False AMCG00000425
AMCG00000391 mRNA downstream 763 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000390 mRNA downstream 35636 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000389 mRNA downstream 79774 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000383 mRNA downstream 461336 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000382 mRNA downstream 541248 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000400 mRNA upstream 3752 13691929 ~ 13693526 (-) True AMCG00000400
AMCG00000399 mRNA upstream 6501 13694678 ~ 13701429 (-) True AMCG00000399
AMCG00000398 mRNA upstream 19606 13707783 ~ 13729942 (-) True AMCG00000398
AMCG00000397 mRNA upstream 58002 13746179 ~ 13752105 (-) True AMCG00000397
AMCG00000405 mRNA upstream 102489 13790666 ~ 13792970 (-) True AMCG00000405
TU188588 other downstream 1145461 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1604557 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3752221 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3855638 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3920977 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 135777 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 881785 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1525237 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1601175 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3119915 16808092 ~ 16834326 (-) True G150729

Expression Profile