RNA id: TU188915


Basic Information

Item Value
RNA id TU188915
length 6335
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G150115
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13739796 ~ 13746130 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttttctttttgtgtttatttaggaAAGATCACACATTCAATGGAATATTGTAATAAACAGTGATTAATTttgcagttttcacaagaaGCATGTAAATCTAAACACTGCGCTTTGACAGATGCGCAACAATGATGAAAACGTATGCAACAGTCATTTTGCTCATCATGATAATGTAAACGAAGGAATCCCGCAGGAATCAGTTTTAATTAACACCACGACACAGCAGTATATACACAGAAGAGCACGTTTTAAAAAACATCGACATTCACAGACTTATACACTCTTGCCGTAATCTGGGACCCACGGACAGTACCCCCATCAGACAAAAAGGTTTTAAGAAGTGTTTAAAAATTTGTTAGAGTTCTTTAGAGGAAAGCACAGCGCATAAGGCAAACTTTTCACTATTCTCGTCCAattcttttttgtttcgttATATCAGGGTTGGAGTCAACTGCAATCACAGCTACAATATTGCGACCGTATGTATGTCTGCATGACTAATTGTCGTTGACCGCAACTCTGGTATgtacacacaaacgcacacgctcacacacGCGCTGCCGTCTGAAAACTAAGCAGCCCAGCATGAATATACTTTAGAACTGAACATCTTCACAGAATCTATCCTTTGCATCTGAACTAAAATGATTTTCATCAAAAGCCAGAAATCCATCAAGTTCACTCAGAGCAGTTTGTTTCCAGCACCAATGTGTGTATACTATATGTGTATACAAACATATGgtgaatacaaaaatcaatatatatatgtatataaccaTGGACAAAAACTATTTGCACACCCTTTTGGAAACTAATGATAATTGAATGACATGTACGCACAATATCAATGATGAGATTGATAACATTTAAGACAAATTCGGGCAGCCTATAGGAGGATGAGCAAACTTTGTCCATGACTAAAATTTTTCAAATAAGTTAAAAATCTGAGATGacctttcttttgtttgttctattTAAGGCAGGCATATATTTAGCTTTTTAAGTCAGCTAGCACTATTTCTCACATAAAATACCTAACCCCCTTAAAGATATAACGGCTACCCCTTTTGAAAACACACCTCATGTAGTTGTTTCCATGCATTTACAGACCTTCTCTTGCTTTTGCAAAATACTGTGTTCTGAAGCACAATGCTGAATGATTGAGAAATATTCAAATGCATCTGTCTGGAGAATTGGGATCATCGTAGTACTGCTGAAGACAGGGGTAAGAACATTTAATGCCATTTCTTCTCAGGTATATGAGTGAAGACCCATGTGAATTGTACAACAGAACTCAAGATTTTGCATTGAATTGAGATATGAATGATTATGTAAATAATGCTTAATATTTTCTGCTGGGCAGCCATACAGAACTTTAGGGGTATGTATCCAAactacacaagaaaaaaaaaaaaaacatagaaaataaatacaaataaaaatatcagtaTTGATACACACTCCATAGTTATGCATCTATTCCAGTAATGAGACACTGTACTGGGGATGAGGGGTGGGTAGAAAACGCAGTTCTACACCTGGGAttcaggcacacacacacgggctcAACAAGAGGAACTGGGTGAACGAAAATTTGGCTAACATGACATCAGTTTGAAaagattggttttgttttttagagcAGAACAAGTTACAAATCCGACTTAAAACAATTCTTAGCGGCTTACTCGTCTTCCATTCCGATCCTTCTTTAGAAACGAGCACTTCGGTGAAAATGATGGCAAGCAGGAATGAAGCCAGGCAATGAAAAAATTCAAGGTTTCCCTACGCTTATGAACACTCCCAATTGTTTTATGGAATATTTCCATTTGTTAACGCAACAGATCCACCATGCATCTTggaaacaaaaagttaaataaaatcaacGCAATGATCTGCCAGATAAAAGCAATAAACCTTAGACCGCTTAACCTCTACTGATTTTACAGCCTCAAACCTTTTCAAGGGGCCCACAAACATCCCACAGTCCAGTAGTATCAGAGTGGTAACACAGCTCAGCACTTGTGTGGCTGTTCTCAttgaaatgtgaattgtgtAAACTCGACAGATTTGtccaaacacaaaaaaataagaaacgcTGCTGTACAATTCCAAGTGGATGTCACAGAGTGAATACGAAGTTTGATGACAGCAACTTCTTTCACATCCACAATCCTCTGTCCCAGTTCCCTGCAGGGAGAGTTCGGTCCCCCCAGAGCAGGTCTGTGACCATGTGTGCTCACCACCAGTATCAACACTCGAGGGTCCTCAAATGCATCACACTTATTGCTAAaggccaaacaaacaaactaataacaGCCTGAAGATGTTCATTTAGGTAGGCTTCCCTTGACATTAATGAATCTTGCAAAGccaaaaatacaatcaataaatgaatgaaagggGGATAAAGAGGCTGATCTTATGTGAACTGAATGTCATAACGAGTTTGAGATTGTATTTCTTTCCAGTGAAGAGCTATCATGATTGAACATGGAAGAACATCTACCGAGCTACCGACACGCATCACCAAGAGATACAAATAAACCATAACAGATACGTACAACAATAGGTCTATGCATTTGATTCacttacatataaataaatggctAATAGAAAAAACCTGTACAAAATATTATTGCACTATATCGTATAATAcctatatacatgtatattagaCTCTTGACATCAAAAGTTCCATGAAATGATGGTTTCTTAGTATAGGTTTTGGTCAGGGCCAAAGCGGAGGTTAGAAAACAAGAAGTGGGAACACAAACTAAACTATAGTCTTGAAATAACTGGATTGAATAAGACTTGTATTCGAATGGCTTGAGAGGTTACCTGGTTCCTCTGGTACCAGCAGCTGGTTTAAGCTGGCAGGCTTATCCCCTGTATCTCCACTAAGGTCTTCCCAAATCTTCACTGAACTGGACACAGAGTTTGGGATTGGAAATACACTTTCCTTAATGAAATGCAACtgccattatatatttttttatcccaGGGTAAAACCAAGACTACATGGTTAGAATGGCTAAGTGCTCTTGctaccaatttaaaaataaaactgcaaaagaaATCCACAGGCATTGTTGTTGTCCTTTAATTCTTTTCACACAGTTTCAAATGACATTAAGGACAATTTGCCATGTTTTCACCATCCACAGTTCTACTGTTGCCCCTCTACCCTGGGACAAAATTTGAGAAGGGCAGTAAAACCCTATCAGGAGGCCCAGGGCTCAGTGCATGCTGAAACCAGCAGGAGGGTAGTTTGGCTGGCCTGACAGCTCCCAGGTCACTGTGTTGGCACGGAGCAGCACAGAGATTGGCTGACCTGCCCTCCAATCACATGGCACACCCCTGGCTGCACAGCTGCAATCCAGCAGAGGAGATCAGTCTCTTAGCTCCTTCCAAGGAGCAACGACCGATAAATGGTAgggaattaaatcaatacacaaaGTAAACCGACAGGAGTTTAGTCTCTCTCTACTACATACACAGCTTGTATAAAAACACGGTACCACTCCCAAGATCATTTGCTGAGAATGCTACTTCAAGGCAACTCGTTGGTTAACACAAATTCCATCTCTGCTATTCACCGATCCCTCTTCCCGGGCCTCTGTAGTAACCGTACCTGCACACAGTGTGGCTCAGAAGTGTGGGAGACCTTACCTACACTGCAGTATTATTTGATTAAACTTAATTCCAACAGAGggtaatatttcaaatatggaATTTATAGTGTTGAGTAACACCAATACTATCTTAACTACCAAACAAATCTATTATGCGTTGTCAATGCAAATGGCTCAATTTCACACTTTGGATTCAATCTAGAAGAGATTTACTGCAGTGAAGTCAAACCAGAGCCAAGGTTTTAATTGTAATCCAACTAATCTTTTGCTCTTAATAATCTctattgaaataaacaatagCTTAACTTTTGTAGGGAGGTCCGATACTACCGAGCAACACGGTGTACACCGATAAAACCAAGGTGATTATAATATTGGTGGTCCCTTTTTACAGTTTGTAACTATAAGAGAGGTGCAATTATGGCGAATGTCAACactgtaatatacagtacagtcattTATTAAGAGTGGATTCACATTCCCAATATCAGTTGAGAAGAATGCTGTTGGGTTCCAAAATGGCCACAAACTTAGAGATATTATTCAAGTACCTGCACAAGGCAGGGCCAAGATCAAACAACTATCAATAACTGCTCCCAGTGACAGATGTTAACTTTGGTATACCTGTGTTTTAAAGGTACATGTTAAATAGGATCAACTTTATAATCACCTGGCTTGTctgcatgtgtatgtatatgtatattacatacacacacacatatatgtatgcatgttatgtttatataaataaacataacatacatacatccagagagagagcgagcgagagagagagagaaattcacAACAATGTGGTTGGTTTCTGAAGGCAAACACAGACAAGAAGAGTAACAGATGAGTTCGGAAGGATATCATTTCTCTTGACTAAGTGGtcaaaaaaagacaagaaaaggaaagaacagCGCTCATTACAGCATCTCCAGCACTGCCATGTGTCTGCCTCTCTCAACACACTCACAAAGTTGTACTGacattgtttacatgttttacatttccatcaATGCAATGTCAGAGAAACCTCAGCTCAAGGGGAACTACACATAATTACGGTatacaaaagacacaaacacacgcacaaacaatttcaaaaataatattcataataaataaaaaataaaaaagtcttaTTGCATtcttaaaaaagcaaacaaaaaacaaaacaatgctaCGGAcctcaatttaaaacaatatgggCAATATCCACTAGATTAGTTGGTAAGTGCAATGCAGTTCTCTATAGTTTTCTGACATGCAAATATTATAATCACTCTCTATATTTTCCGTTTCCATATGGCCCAAAGTACATAAAGAATCATTTTTCCCGCAGTTAACCCCTGACCCCAGTGTAGATCTGCAGAGTCCCTTAGTCCTGCAAACACCCTGACTGCAACAGAAGTCTCACTGCGCCTCACTTGCCACCTCAGCTATATGACACGGGTGCCCTCCCTGCCACTCTGTGGGATTCACAACAGGGCTGAGATCTGTGGAGTTACCTTCTTTTCTCTGGTGTGCTTTAGTACACTGTTCTGCTCAGGAAAGATGGGATAAGGGGATGACAAAACCAGGGGGTTCAGCCAGCCCTCTCAACCAACATCATACTAAAGCTACTTTTAATTGCCTTTCATATCTATTCATGTACAgctttttaaaggaaaaaaataggaATTACCAACACACTTCAAAGACCTCACAGCAGTCTCAACTCCATCAGCAGCATCCGTATGTTTGTGAACGCTGAGCTGAGCCATCATGCTTAACATGTATCAACTGTCCCCAAATGGCTGAGTTTGTATAGTTATGCGTATGTCTGTTGCATTAACGGCACCTGTAGCTGCAGCAGAACCCAGGAGTGGCACGAATTTGCTCACAGGGACCAGTTACACATGTGGCAtctgttcattcatttttggCACTTTTAACGTGGGTTGCTGCTTCCTTATGCAGGAGGGTAAAACCACAAGCAGAAATCCATCTCCAGCACTCCCAAGACACCAACCCAACTCACACAGGGATGCGCGTTCAGTAACCAAGTACACCAGAGAAAGGAGAGGATAACTACGACATGACTTGACTGAGGCCTGTTTACAGTCTCTCTGGGGTTTTAGGTGGCAACAACAGTACTAAGGGATGCAGGCCTACTAAGGCACAGCGATTTATTGCATGGAGCCAGCTTATCAACctacttatatatttttataatgataCAAATTCAGTCATGGAAATAAATTGGTAAATGAGGGAAGCGGGGGACTCACaggcacaaaataaataaaaacacacacacaaaataaatacatataaaaaacaactaagAAACAGTTAAAGTAATTCATGCACTGAGGAACGTTACACTACAACAAAGACATCGTTAACAGCTTTATCCTGAATCCTATGATAGCACCAGATAGAGTATCATTTACAAAATCCGTCTGCAGTGGCTATGCGTGAAGGATTACATCGTTCATATTCCATACGTGTAAAACTACGGGAAATGTTGGGACAAATGTGAAGAATTGTTTAGAAACTGAAATGTAGAAGCTTCTTTACAATTAAATTGGTTAAACTGGAGATTAAAGTCAGTGACCTAAAGGAGGGTAACGTCCTATCACTTCTATCGCACAGGAAGCCAGGAAAGTGACTTGCACAGCTCAGTGAAGTGTATTGCGCTTGTTTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188882 lncRNA downstream 51619 13687771 ~ 13688177 (-) True G150086
TU188866 lncRNA downstream 57665 13599834 ~ 13682131 (-) True G150072
TU188880 lncRNA downstream 71657 13667562 ~ 13668139 (-) True G150084
TU188879 lncRNA downstream 89791 13649393 ~ 13650005 (-) True G150083
TU188783 lncRNA downstream 771081 12966960 ~ 12968715 (-) True G150007
TU188919 lncRNA upstream 10386 13756516 ~ 13761597 (-) True G150119
TU188988 lncRNA upstream 256946 14003076 ~ 14019526 (-) False AMCG00000409
TU189048 lncRNA upstream 405458 14151588 ~ 14153846 (-) True G150219
TU189121 lncRNA upstream 499687 14245817 ~ 14250061 (-) False AMCG00000425
TU189160 lncRNA upstream 749329 14495459 ~ 14495660 (-) True G150306
AMCG00000398 mRNA downstream 9854 13707783 ~ 13729942 (-) True AMCG00000398
AMCG00000399 mRNA downstream 38367 13694678 ~ 13701429 (-) True AMCG00000399
AMCG00000400 mRNA downstream 46270 13691929 ~ 13693526 (-) True AMCG00000400
AMCG00000391 mRNA downstream 52788 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000390 mRNA downstream 87661 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000397 mRNA upstream 49 13746179 ~ 13752105 (-) True AMCG00000397
AMCG00000405 mRNA upstream 44536 13790666 ~ 13792970 (-) True AMCG00000405
AMCG00000393 mRNA upstream 198729 13944859 ~ 13948608 (-) True AMCG00000393
AMCG00000409 mRNA upstream 271555 14017685 ~ 14028927 (-) True AMCG00000409
AMCG00000408 mRNA upstream 308223 14054353 ~ 14061825 (-) True AMCG00000408
TU188588 other downstream 1197486 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1656582 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3804246 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3907663 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3973002 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 77824 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 823832 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1467284 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1543222 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3061962 16808092 ~ 16834326 (-) True G150729

Expression Profile