RNA id: TU189048


Basic Information

Item Value
RNA id TU189048
length 2207
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G150219
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14151588 ~ 14153846 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttattaacagtaatacatttatatatatatatataatatataaatatacacaatatacattatCAACACAGACTTACAGACCtttcctgaaatgttttttatttacaacaaaaattCCTTTCCGATAACATCCATTATAAAGTTATGAGAAAACACTGATGTCCTATGCAAAGTGGTTATGTATGTTTCAATATGCGTGTAGTGGTTAGGAGTagcggtcagggctctggactctggagcggATGGGATgtgggacactgctgctgttcccttGAGCGAGACACTTTAcctggattgctccagtaaagtAACCCAGCTAAGTTAATGGGTAattaatattgtaacaattgtaagttgctctggataagggcatctgttcAGCAACATAACGATACCGCTCTATTTCATACAGAGAGGTTTATTTGGCGTGTTGATGTATAAGACTTCGAGATTTGACCATCTTTGAGAGTCCACTGTGAACTACATTCCCCCAGAATAAATAGGATAGAAATAGACGATTGATGGAGGGATTTGCTTTCCCGAATAATAATGAGAAagcaaatatacagttaaataataCCAGTTTTTGGTTCATGTTTTTAGAATGTAAATAGCCTAAGTGGAGCAAGGCGAGTCACAAAATGAGTGATGAATAATGTAGACATTTTTGCCCCATATAGGTCCCTTAAAGTCTAAACACACTGCTGGGACATAATGAGCTTAGGACAGAACACAGATGACCTCAATTATCTCCTTATCAGAAGTGGTGCGTCTCTGGTCGCCCACTTCACCAGTCACCTACCTGAGGGGAATTGTTTCGGAAGTGAAGACATTTCAGATGGAAGGGAATTGAAATGAATCAAAGTTGAGAACCATCTTCAAAACCATTTAGGGCAtgggtaaaaaaacaacaacaggaatgTGATGGAACTGTTCATTATCATAGGGTCCCTCTCCATTCACAGCCTGTTACACTTCTCTTCAATCCTGTTTTTTATGCTTGGAATaccattattttaatgataactGTTGAAAGGGCTCTTCAAGTCTAATTGCCTGGCAGTACATAGGGACAGCTCATGATAACGCCACGGTATTTCATTGCCTAATTAATAAATCCTGATTTTCAAGTGAGTATTTCTTCATCCTGACATGTAGTCCTGTTCTTTTCGGTGGTTGACTGTATTGTGGTGCCGCGACTTCCCCTTAGGATCACAGGTGCACATGAAGGTAGAGTTAGGTAACACTTATCTCATGATTATATCTTCCAATTCTGCCTCACGGGAGAAAAACAATCTTCTGAATTGTCAGTGGCACCTCTCAGTTGAATATTAGAAGTAGCTCATGAGCATATGAGAttatgacaaacaaacacaacaccagAGAAATAGATAAATAGGTCATATTTGCACCAGGATGTGATCAACTGTAAGGAATTGCCCAAGAGGGAGACTGCCACCTACTGCAAAAATAATACGAGAAATAATTCAGTTAAGGAGTTTGTACTTTGTGCCGATTTAGATCAATTGAATACATGATCATACAGTAGTCCTGTATCATTTATTCAGGTGGATTTTACATAGCCTTTTCTTTGAGATGCTGAGATGACACCCTTTACTCCTTCACAAGCACTCCACACCTCCATTCAGACACGTTAATAGCATAATTTATCAGCAGTTACACGTGTATAAACCTCCTCTTAACGAGTGGTATGATTCTTGCAGTCCTcaaggtctctctctctctccatttgtGATGTGTTTCAGTCCAGGGAAAGGCTCTGTACAGCACATGGTTTAAAATAGCAAAGTTCCTGTTATTGATGACTATTGCCTCTATTCTTAGTAATAAATACTTTAAGTGTTTTagaaagaaatgaaacaaataaaaatcgaGAGATCTCCGTCCTCCCTGATGCGATTAGTCTTTAAACGTTGAGCTTGGTCCTTCACAGCCATCCCGCTCCGCACGCCTGTCCGGACCGGCCACTTGAGGGGACGAGCCGTGGCTGTCTCCGGATGGCAGACCGGCTCCGGCCGTCTCACTCCCGCGGGAGCCCAGTCCCCGTCACTCAAGCCCAGATGAAGTACGCAATATCCGATAGAAAGTGCTTAGAAGACTGCCAACGTTGTTAACTCTGACcagaaaaggaataaataaaaggagCCAGGAGCTGCACTTCAGTTACCTGCGAGGGGGCTGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188988 lncRNA downstream 132062 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 389991 13756516 ~ 13761597 (-) True G150119
TU188915 lncRNA downstream 405458 13739796 ~ 13746130 (-) True G150115
TU188882 lncRNA downstream 463411 13687771 ~ 13688177 (-) True G150086
TU188880 lncRNA downstream 483449 13667562 ~ 13668139 (-) True G150084
TU189121 lncRNA upstream 91971 14245817 ~ 14250061 (-) False AMCG00000425
TU189160 lncRNA upstream 341613 14495459 ~ 14495660 (-) True G150306
TU189312 lncRNA upstream 736688 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 970213 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 1075051 15228897 ~ 15229292 (-) True G150476
AMCG00000414 mRNA downstream 58304 14082501 ~ 14093284 (-) True AMCG00000414
AMCG00000408 mRNA downstream 89763 14054353 ~ 14061825 (-) True AMCG00000408
AMCG00000409 mRNA downstream 122661 14017685 ~ 14028927 (-) True AMCG00000409
AMCG00000393 mRNA downstream 202980 13944859 ~ 13948608 (-) True AMCG00000393
AMCG00000405 mRNA downstream 358618 13790666 ~ 13792970 (-) True AMCG00000405
AMCG00000413 mRNA upstream 12035 14165881 ~ 14167002 (-) True AMCG00000413
AMCG00000428 mRNA upstream 58823 14212669 ~ 14214918 (-) True AMCG00000428
AMCG00000427 mRNA upstream 76873 14230719 ~ 14235167 (-) True AMCG00000427
AMCG00000425 mRNA upstream 91997 14245843 ~ 14261332 (-) True AMCG00000425
AMCG00000426 mRNA upstream 122126 14275972 ~ 14285610 (-) True AMCG00000426
TU188948 other downstream 324879 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 1609278 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2068374 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4216038 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4319455 9831755 ~ 9832133 (-) True G149402
TU189195 other upstream 416116 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1059568 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1135506 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2654246 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3853250 18007096 ~ 18009850 (-) False AMCG00000539

Expression Profile