RNA id: TU189312


Basic Information

Item Value
RNA id TU189312
length 1173
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G150427
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14890534 ~ 14891706 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGTGTCTGAGCGGCACACAATGTAGCCGGCATGAGCTCACTGTGCATTCACCCGATACAATGGATCTCAGGACTGGGAAATAAACGAGGAGATTTCCGGGAAGAAAAAAGCATGCTGTGAAAAGGCATGCATGGACCACGGTGGGCTGTCAACGGCGATGAAGTCCAGGGACCAGGGATTGTGCAAGGCCGATTGTGCAGTTTTGCGAGGCGGTGTGGACGTGGGTTGGATGACCTCTGGTATAAATGTAACTGATCTCCACTAGATTCATGTCTGGATGCTGAATTAAGGCGTTTTTCTTCTCGCTTGTCGGAGTACAGTTACTACTGAGATGATACACATGTGTTACTTACAGTTGGGTTTGTAGATTGCTGTACTACACGGTGCTATATTATTAAACCACAAACTGTTGTgttcaatgtatatttaatacacTGATAGAGCTGCAACACCACACTGTCTTAGGTTTCTGAACCGtttctcaattattattattttttaatcatattgcGCTTCAAAGATGCATGTCTGAGCCGTGAGACTAATGATTTTAATGGGAACCcgattatttttatatattattttatagttataCCATTGCATTGTCTCTGGGCGAAGGTGAAGTCTTTTAGATAGCAACATATTTGTTGATATCATTACCTACTTTTGCTAAGTATGTCTTGGGATgcctttctttaaaacaaataagagtTATATTTTATAGTGTATTTAAGTTCACACGTTTTCCTTGcagtgtaatattttttttctttgttttttgaaagaaaacaaacaccattATTGCTTAAAAACGCATCAAGATGAATGTTGCAAACTAGTGAATGATAGATCACAACAGGAAAAACCTTTTGAAGTAAGATGCCTTGTCCTGTTGAATATAAACCCAGTATATCTGTCACATATTGACATACATGTTGCAACATGTCACTATGTAATACTGTGCACTTCAGAGATTGTGCCATTTGTGTTCCATAGTGGATGTCCTTCTCTGCTTTCTTATCATTTGTGGGTTAGTTGTGATGTTGATTGGGCCCATTTACTTGCAAAGGGCCACTACATTCATTGTGCCATGAGCTGTATGGCATTGCTGtatagttgtgtgttttgtggaaATTGTCACTGCTGAGAGTTTGAGGCGGTCGAGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189160 lncRNA downstream 394874 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 640473 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 736688 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 871008 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 1128937 13756516 ~ 13761597 (-) True G150119
TU189360 lncRNA upstream 232353 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 337191 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 358919 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 369681 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 379690 15271396 ~ 15273123 (-) True G150504
AMCG00000444 mRNA downstream 4 14881250 ~ 14890530 (-) True AMCG00000444
AMCG00000453 mRNA downstream 21877 14862756 ~ 14868657 (-) True AMCG00000453
AMCG00000455 mRNA downstream 29710 14860339 ~ 14860824 (-) True AMCG00000455
AMCG00000454 mRNA downstream 31546 14839239 ~ 14858988 (-) True AMCG00000454
AMCG00000451 mRNA downstream 65925 14822861 ~ 14824609 (-) True AMCG00000451
AMCG00000445 mRNA upstream 48039 14939745 ~ 14943179 (-) True AMCG00000445
AMCG00000446 mRNA upstream 62962 14954668 ~ 14976422 (-) True AMCG00000446
AMCG00000442 mRNA upstream 150434 15042140 ~ 15065371 (-) True AMCG00000442
AMCG00000459 mRNA upstream 200436 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000457 mRNA upstream 232319 15124025 ~ 15137923 (-) True AMCG00000457
TU189195 other downstream 318102 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1063825 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2348224 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2807320 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4954984 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 321708 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 397646 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1916386 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3115390 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3519782 18411488 ~ 18412525 (-) True G151087

Expression Profile