RNA id: TU189373


Basic Information

Item Value
RNA id TU189373
length 396
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G150476
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15228897 ~ 15229292 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGAACAGCGCGCCGCACACGGAGCTCCTCGCCGGGCGCGGTGGCGTGCGCCTGTAATCCCAGCTGCCGGGAGGCTGAGGCTGGCGGATCGTTTGAGCTCAGGAGCTCTGAGCTGCAGCGGACTATGCCGATCGGGTGTCCGCACTAAGCTCGGTATCGATATGGTGCTCCTGGGGGAGCCCGGGACCACCAGGTCGCCTAAGGAGGGGTGCACCGGCCCAGGCCGGACACGGAGCAGGTCAAAGCCCCCGTGCCGCTCAGTAGTGGGATCGCGCCTGTGAATAGACGCTGCAGCGCAGCCTGAGCAACACAGCGGGACTCGGCCTTTTTTGCGTTTAAACAACAGGAGTCTGTTTTTACGTTTTGAATTTAGTATGCAGTTAGTAGTATTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189360 lncRNA downstream 104301 15124059 ~ 15124596 (-) False AMCG00000457
TU189312 lncRNA downstream 337191 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 733237 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 978836 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 1075051 14151588 ~ 14153846 (-) True G150219
TU189382 lncRNA upstream 21333 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 32095 15261387 ~ 15263576 (-) True G150502
TU189409 lncRNA upstream 42104 15271396 ~ 15273123 (-) True G150504
TU189401 lncRNA upstream 46671 15275963 ~ 15278056 (-) True G150497
TU189421 lncRNA upstream 64927 15294219 ~ 15295205 (-) True G150514
AMCG00000464 mRNA downstream 6252 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000466 mRNA downstream 17026 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000458 mRNA downstream 48380 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000457 mRNA downstream 90974 15124025 ~ 15137923 (-) True AMCG00000457
AMCG00000459 mRNA downstream 120446 15092142 ~ 15108451 (-) True AMCG00000459
AMCG00000463 mRNA upstream 996 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000467 mRNA upstream 24000 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000465 mRNA upstream 50197 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000475 mRNA upstream 60011 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000476 mRNA upstream 68585 15297877 ~ 15309522 (-) True AMCG00000476
TU189371 other downstream 6154 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 656465 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1402188 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2686587 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3145683 12081543 ~ 12083214 (-) True G149751
TU189419 other upstream 60060 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1578800 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2777804 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3182196 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3183548 18412840 ~ 18413465 (-) True G151088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU493396 False 840 lncRNA 0.43 3 CI01000305 30965 ~ 360976 (+)
rainbow trout (Oncorhynchus mykiss) TU399295 False 406 lncRNA 0.60 2 NC_048568.1 41590395 ~ 41682746 (+)
eurasian perch (Perca fluviatilis) TU92015 False 225 lncRNA 0.49 2 NC_053117.1 40368481 ~ 40368843 (-)
striped catfish (Pangasianodon hypophthalmus) TU92015 True 1933 lncRNA 0.49 2 NC_047599.1 5380298 ~ 5382271 (-)
striped catfish (Pangasianodon hypophthalmus) TU219728 False 491 lncRNA 0.59 2 NC_047605.1 21335472 ~ 21339757 (-)
tiger barb (Puntius tetrazona) TU219728 False 375 TUCP 0.53 3 NC_056720.1 1583744 ~ 1614538 (-)
mexican tetra (Astyanax mexicanus) TU92015 False 310 lncRNA 0.61 2 NC_035903.1 32258341 ~ 32265748 (+)