RNA id: TU189401


Basic Information

Item Value
RNA id TU189401
length 1810
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G150497
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15275963 ~ 15278056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATCATTTCACAGTATAATGGTTTTATTGTGGTGAAAATTACAAGGTCTGTAGCTCAGAGGGGATACTGAGAAATTGTTTTTACctttaaaagaaattaaataacttcaGACATTCCCAAGATAATGTTGAACAATCTCAAACATCACTTGTTATTCAATAAATGAGAGCATCCAATGCTTTCATACTGAGACAGGCTAATTAAAttctacagaaatgtattttgtctaGCCTTTTTATTGAACTCTGGTGAGAAATAATACCCAAACTAAAGTAAAAACCTATTGTGAATTATATGAACTgcaataaatatgttaaaagaacaatacggtacatttttattcaagacaaaaagaaaatcctttcatgtttggttttatattttttttatttaaaacagtcaaaacaaattaatccgTTAACCACAGTGGAAATAGTTTTATTCACTGTTTAAAATCTTCAGAATTACCCATAAGACCAAATTTCGATAgccaagagaaaaagaaaaagaaaaactctgcCCAAGAAAAAAAGTTACCGATTTGATGCAGAACACCACAAGCATCCAGTATTTGTGAATCTGAAATTTGTATTAACATTACCATTTCAAACTAGGATTTTGAAAAGTGGGAGAGCAGTTACTGTAACTAATGAAGTGTTGCCTTCCATTTgtaaaaattacacaattaagcAGGATACATTTCCAAACAACCTGATTAACTACTTCTGAATGAGCAGACTATAAAAGTATTAAACCttatgtacaattattttgaaaacaccAATAAAAGTAACAACTAACTAAATAAAGGTCATTCAAAATGTTCTTAGAGCTTCTGAAGATTGATTTATTGGAAATCAACCATTACACCCAACTTAAAGTCTATATTTGAAAGTACATTCTTCTGGTTTATGTTGAATAAAAATGACCAAATGAGTAGATATTGTTGTATGTAAACTCTTACTAACATTTCTGTTGTGGACTTGCTTATGGTATTAAAAGAAATCCAGAAAGTGGAAGAAATCCAAAGCATTTGATACAAAAAGGGCCACTGCGGTTAATGATAAATTATGTAACTTATATCCTCAGAATGACCGAGTAGAAAACCCAGGGTCACTGCTTTCTGGATTCACAGGACGTTCTTTTTAATGGacactttatatttttgattaaaaacaaaacaagtacatGTAATAAGGGGATGGAGTCTGAACTTCAAAAGATGAAAATGACTTTGAAGATAAGTTCAAATGAGTTTCTGATAAATTACTAAATCCAGAAGTCTGTCTTCTTTCAGTTGCAGaatttctgaaaacaatatttacaaaaataaaaatacggTGTCAGAAATGATGCTATTTTGTGACACTGACTTGACAAGTTGAGGgtgaaaaaaagtatttcagtgGTAAGTATAATCCTTGTCAGAATGACCACAACAAACCAGCGGCTTTAGAATCCCTTCAATTAACTCCCCAGTACTAGATTTAATTCACCAGATCATCTCGTTGGTGGCCGGCAATGCCACCTGTTCTGCAGTTTTCAGctcaaattcatgtttttactcGATGAGTTTCTTTGCCTTGAAGAAGCGGCGCAGGTAGAAGACCTGCCATGTGGCCAGACCGATCAGGCAGCACATGGAGAAGATGCTGAAGTACAGGACACGGGTGTTCGTGGACCATTGGTGTCCCTCATCTCCTCTTCTCGTTTCTTCATGTACGCAAAGTCATTAACGATGGACTCGGACAGGTCCTCCAGTCGCCGGAGTTCCACTTCCAAAGGCTTCAGTTTCTCCACCTTGGCAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189409 lncRNA downstream 2840 15271396 ~ 15273123 (-) True G150504
TU189406 lncRNA downstream 12387 15261387 ~ 15263576 (-) True G150502
TU189382 lncRNA downstream 25134 15250625 ~ 15250829 (-) True G150485
TU189373 lncRNA downstream 46671 15228897 ~ 15229292 (-) True G150476
TU189360 lncRNA downstream 151367 15124059 ~ 15124596 (-) False AMCG00000457
TU189421 lncRNA upstream 16163 15294219 ~ 15295205 (-) True G150514
TU189478 lncRNA upstream 183790 15461846 ~ 15467306 (-) False AMCG00000482
TU189486 lncRNA upstream 220116 15498172 ~ 15527390 (-) True AMCG00000469
TU189508 lncRNA upstream 288703 15566759 ~ 15568750 (-) True G150581
TU189513 lncRNA upstream 300833 15578889 ~ 15580921 (-) True G150586
AMCG00000467 mRNA downstream 20134 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000463 mRNA downstream 33810 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000464 mRNA downstream 53318 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000466 mRNA downstream 64092 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000458 mRNA downstream 95446 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000465 mRNA upstream 1433 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000475 mRNA upstream 11247 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000476 mRNA upstream 19821 15297877 ~ 15309522 (-) True AMCG00000476
AMCG00000477 mRNA upstream 32945 15311001 ~ 15320215 (-) True AMCG00000477
AMCG00000480 mRNA upstream 105601 15383657 ~ 15390950 (-) True AMCG00000480
TU189371 other downstream 53220 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 703531 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1449254 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2733653 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3192749 12081543 ~ 12083214 (-) True G149751
TU189419 other upstream 11296 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1530036 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2729040 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3133432 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3134784 18412840 ~ 18413465 (-) True G151088

Expression Profile