RNA id: TU189406


Basic Information

Item Value
RNA id TU189406
length 2080
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G150502
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15261387 ~ 15263576 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCTGTTCCTTCCAAATATTGCCCATTTAAtcccaacacacacatgaactagaataaatcaatgtaaagtCTATTAGGTTTCATTCATCCCCCAAAGGATTTATAGTGTCAAGAATCGAAGATACCaatttaaaaccacaataaaacaaacagtctTCATTTCTCTTTGCAGATATTTATTGTCTGTTATAACAGGCAACCAGTGCGGTTGTGTTGAGGTTTAACCAATTTTAAACCTTccaaaagtagaaaaataaaattaaaaatataaatatcagaaGTTAGtttcaacaattaaaacacaaaacgtTTTCACAGAAAACTTTCATACTCCGATTTAGACCACTCAGACCATGGTTTTGACAAAGCACACCATTTATAATTATCACAAACATGAAATAGTGTACAACAGTAAATTGTCCATCAGCTAGAAATCAAACGGTCGGgttattttaaatcagttcaCTATTGCCATTAAACACATTAAGTCTGCTGCACTAatacaaaatttgaaatatctagcaccaataaattgaaaataagtaGTACAGAACATTGCATGATTCAACATGCTTTAGACAACAGCTTTCAGGATATTTTGTGAATTTAACAATAAGCATGCTTTTTGCTACATACTTGGAAGAGGCAAGtatggtttaatatttaaaggataaaaataaaaaccttttaggTATGTCCATGCCATAGCCCTAGGATCATTGTACCCTGCATCACATTAGAAATGTAGTTGGAAGTCCATAATATAACTAAAGTTTCCTTACAAGGCAAGAAGGGTGGGAGAGCTAAGAGAGTCAGATGACTGATCATTGCTGCTGCTACCTCTTTGAGTTACTCCACAGTTAGGCAGCGACTCCGATTCAGGGTAAGTGAACACAAAGGAAGACGTGTAAGTAGTGCAGGATGGGGTGCAGGTTACTACTGGGGTGCACAGAGGCTCCAGGTCAGTAGTTCCTGGTGTGTAAAGTGGTTCCCATTCAGGTGCATAGAAGGAACTGGACAAGTCCATATCTGGGACTGATCGTGCCGTTTCTACCGTGTTCTTCTTGAATGATGCAAACAGATCAAATGATTCCTCTTTTAATTCTAGGGAGCTGTCCAAATCTGACATTTTCACCGTTGAAGCACAAGCTTCTGAAGCCAAGGGAAAGAGGGATGCTTTGGAAGAGGTAGCCATAGACTCGGTTGAGCTGGAAGCCTCTGGAATTGTGTTGTGAATCTGGAAACTTGAATCTTCACATATGCGTAGAGGAGTGGAGACTGTGGTGTCTGGAAATCTAGTGTCCAGGTCTGTGGGAATCTTGCAGGCAGGCTTATGTGCTGCCAAGATGAACTCCAGTTTCTCCTTTTCCTTCATGAGATTGGCAATTTCAGTTTGCAGAGCAGATTTCTCATCCTCCAAATTGTCAGTTCAGATTGCAGGGTGTCAGTGAGTTCTCTCCTTCTATTGCGGCACTTTGCTGCAGCCAttttattcctctctctccGAACCTTCCgtttctcttcttcttcaggCGAAAGctatacaagaaaaacaaattcttaAATTTAGATCCTACGATCATTCCAATGTCATATTTTCAGTCAGTTCACTTGCCCTCTACAGGAACCGACTGCAGGTCTCTCTGCAGTGGTGCTATATATAGAAAGCTATTGCAGACTCTTCATGACCTGAATTTCAAACAGGAGCCTCAGTAGGAGGCAGTGATGCTGCATAAAGCATTCCTATTTCTTGTGAAGATAtatgcatgtttaaaatattactctggtgatttttctatttttgcacAGAGAGAATGAGAAGTTAGAATTTCAAGGTACCTGTTCAATTTTGCCCCTCCTGCCAGTGCTGTGACCTCTGGTTCCAGCAGTTGTGATCATCCCTGACCTGGAGTACACAGGGCTGGACCCCTGTACACCGTAAGGGTGGGCTCTGCTGTGGGATGGGGCCACAGAAGAGATGAGAGTAGTTGGCTGGACCATCCACTGCAGATCTGGGCTTGTAGAAATGGCCGTGACAGTTGGGATGAAAGAGGCACTTGAAACCGTCAGATCAGTGAA

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189382 lncRNA downstream 10558 15250625 ~ 15250829 (-) True G150485
TU189373 lncRNA downstream 32095 15228897 ~ 15229292 (-) True G150476
TU189360 lncRNA downstream 136791 15124059 ~ 15124596 (-) False AMCG00000457
TU189312 lncRNA downstream 369681 14890534 ~ 14891706 (-) True G150427
TU189160 lncRNA downstream 765727 14495459 ~ 14495660 (-) True G150306
TU189409 lncRNA upstream 7820 15271396 ~ 15273123 (-) True G150504
TU189401 lncRNA upstream 12387 15275963 ~ 15278056 (-) True G150497
TU189421 lncRNA upstream 30643 15294219 ~ 15295205 (-) True G150514
TU189478 lncRNA upstream 198270 15461846 ~ 15467306 (-) False AMCG00000482
TU189486 lncRNA upstream 234596 15498172 ~ 15527390 (-) True AMCG00000469
AMCG00000467 mRNA downstream 5558 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000463 mRNA downstream 19234 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000464 mRNA downstream 38742 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000466 mRNA downstream 49516 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000458 mRNA downstream 80870 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000465 mRNA upstream 15913 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000475 mRNA upstream 25727 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000476 mRNA upstream 34301 15297877 ~ 15309522 (-) True AMCG00000476
AMCG00000477 mRNA upstream 47425 15311001 ~ 15320215 (-) True AMCG00000477
AMCG00000480 mRNA upstream 120081 15383657 ~ 15390950 (-) True AMCG00000480
TU189371 other downstream 38644 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 688955 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1434678 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2719077 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3178173 12081543 ~ 12083214 (-) True G149751
TU189419 other upstream 25776 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1544516 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2743520 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3147912 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3149264 18412840 ~ 18413465 (-) True G151088

Expression Profile