RNA id: TU189409


Basic Information

Item Value
RNA id TU189409
length 354
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G150504
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15271396 ~ 15273123 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGGGAATTTACTCTCAAAGCAGACTTCAAACATGTCATAATCCTCCGTTGTAAAGGCAAACTTCCCTTTTGAAGCATCTTCTTTTGAATATAGGATGTGGCCAGAGGAGTCGATGatctAAGATTGGTTTTGGTGTTGGGCTGCTCGCTAACCTCGTATTCACCGGTTACTAACACATCTTTGTGTATTTCTTCCCGCAAACATTTGCGAGAGTTTACTggtaaatagaaagaaatagaTAAAGCCGACCCAAAGAGGGTCGGGAGAAGAAGTAGCGCAAAGAACCGAGACATGGCTACTGAAAGCCGGATACAACAGCCAGGGGATGAGTTAGTGCAGCGTAATACTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189406 lncRNA downstream 7820 15261387 ~ 15263576 (-) True G150502
TU189382 lncRNA downstream 20567 15250625 ~ 15250829 (-) True G150485
TU189373 lncRNA downstream 42104 15228897 ~ 15229292 (-) True G150476
TU189360 lncRNA downstream 146800 15124059 ~ 15124596 (-) False AMCG00000457
TU189312 lncRNA downstream 379690 14890534 ~ 14891706 (-) True G150427
TU189401 lncRNA upstream 2840 15275963 ~ 15278056 (-) True G150497
TU189421 lncRNA upstream 21096 15294219 ~ 15295205 (-) True G150514
TU189478 lncRNA upstream 188723 15461846 ~ 15467306 (-) False AMCG00000482
TU189486 lncRNA upstream 225049 15498172 ~ 15527390 (-) True AMCG00000469
TU189508 lncRNA upstream 293636 15566759 ~ 15568750 (-) True G150581
AMCG00000467 mRNA downstream 15567 15253292 ~ 15255829 (-) True AMCG00000467
AMCG00000463 mRNA downstream 29243 15230288 ~ 15242153 (-) True AMCG00000463
AMCG00000464 mRNA downstream 48751 15213402 ~ 15222645 (-) False AMCG00000464
AMCG00000466 mRNA downstream 59525 15187199 ~ 15211871 (-) True AMCG00000466
AMCG00000458 mRNA downstream 90879 15141396 ~ 15180517 (-) True AMCG00000458
AMCG00000465 mRNA upstream 6366 15279489 ~ 15288455 (-) True AMCG00000465
AMCG00000475 mRNA upstream 16180 15289303 ~ 15291255 (-) True AMCG00000475
AMCG00000476 mRNA upstream 24754 15297877 ~ 15309522 (-) True AMCG00000476
AMCG00000477 mRNA upstream 37878 15311001 ~ 15320215 (-) True AMCG00000477
AMCG00000480 mRNA upstream 110534 15383657 ~ 15390950 (-) True AMCG00000480
TU189371 other downstream 48653 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 698964 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 1444687 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2729086 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 3188182 12081543 ~ 12083214 (-) True G149751
TU189419 other upstream 16229 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 1534969 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2733973 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3138365 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 3139717 18412840 ~ 18413465 (-) True G151088

Expression Profile