RNA id: TU189570


Basic Information

Item Value
RNA id TU189570
length 231
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G150634
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15848035 ~ 15871468 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgtgaccaaatcaaagaccatggaatcacatatgataacacacaaaacgttacacaaaattacaaacacattgactacaataccggttagtaagacgaaggtgagtctctcattagtattgttagtcggacattaaataactaatgcaggttagtatttaagtcaaataacttcttgTTAtATAcggtgcatccggaaagtattcacaccgcTTCaaattttccacatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189562 lncRNA downstream 89875 15756853 ~ 15758160 (-) True G150626
TU189515 lncRNA downstream 228247 15619221 ~ 15619788 (-) True G150588
TU189513 lncRNA downstream 267114 15578889 ~ 15580921 (-) True G150586
TU189508 lncRNA downstream 279285 15566759 ~ 15568750 (-) True G150581
TU189486 lncRNA downstream 320645 15498172 ~ 15527390 (-) True AMCG00000469
TU189602 lncRNA upstream 361490 16232958 ~ 16233189 (-) True G150661
TU189689 lncRNA upstream 933727 16805195 ~ 16829740 (-) False G150729
TU189691 lncRNA upstream 936793 16808261 ~ 16834326 (-) False G150729
TU189694 lncRNA upstream 951561 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA upstream 962918 16834386 ~ 16836603 (-) True AMCG00000518
AMCG00000472 mRNA downstream 229006 15616963 ~ 15619029 (-) True AMCG00000472
AMCG00000469 mRNA downstream 321021 15500971 ~ 15527014 (-) False AMCG00000469
AMCG00000482 mRNA downstream 368986 15465324 ~ 15479049 (-) True AMCG00000482
AMCG00000481 mRNA downstream 428465 15415530 ~ 15419570 (-) True AMCG00000481
AMCG00000479 mRNA downstream 436761 15391869 ~ 15411274 (-) True AMCG00000479
AMCG00000494 mRNA upstream 381669 16253137 ~ 16266313 (-) True AMCG00000494
AMCG00000493 mRNA upstream 405530 16276998 ~ 16278955 (-) True AMCG00000493
AMCG00000487 mRNA upstream 778603 16650071 ~ 16659677 (-) True AMCG00000487
AMCG00000488 mRNA upstream 815637 16687105 ~ 16689646 (-) True AMCG00000488
AMCG00000496 mRNA upstream 850706 16722174 ~ 16736751 (-) True AMCG00000496
TU189419 other downstream 556799 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 625292 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 1275603 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 2021326 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 3305725 12522520 ~ 12542310 (-) True G149847
TU189692 other upstream 936624 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 2135628 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 2540020 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 2541372 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 2542587 18414055 ~ 18414558 (-) True G151089

Expression Profile