RNA id: TU189694


Basic Information

Item Value
RNA id TU189694
length 725
lncRNA type read_through
GC content 0.44
exon number 3
gene id G150731
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16823029 ~ 16840596 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAATCTAGCGGCACAAAAGTGTCGTGAACGCAGCCACTGTCAACGACACTGAACTGCATGCTACTATTACATACATGTTCAATAATCTATTATTCATACACATTTTAGGTCAAAGGCAGGGACTATAACAACTGCTCTGTCTTGTTACCTTTTCCGGGGCTGGTAGTTATGGATATAGAGATTGCACTTGAGCTGCCCCTCCCCGAGGCCACAGCACTGCACCCTGACTGGCTTCAGGAAGTGTCTAATGCAACCCTTAACCCACTGAAGTAGACTTGTGTACCTTGTGTACCTTGTGTACAGCACTGAGGAAGAGTGGAGCTGAGCGGTACAGACACACAATCTGTCTCTCAATCCGCGTCCAACAGAGCCGGATCTGTGTCAGAAACATGGCCTTTCTATACACGGCCGCGCACTGGCTGGGCTTTGCCCTGTTGGCTCTtttatttcttgtgtttgttGCGTTTGGTTTGTATTGTCTCTATATAAAGTACATTCACATGAAGTTTGACCACATACCCGGACCCCCTAGGGACAGTTTTCTTCTAGGACATATGCCAACAATGCAAAGAGAAATGGACAGAGACAAAGTGGTGCATGACACATTACTAGAATGGTGAGCAAACTAGACTCTTTTGACTCCATCTTGTTCTTAATTCAGTGACATTCAGTTAATTGTCCTGTAAACGaattttaattgatgtattatttaacaGTGTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189602 lncRNA downstream 589840 16232958 ~ 16233189 (-) True G150661
TU189570 lncRNA downstream 951561 15848035 ~ 15871468 (-) True G150634
TU189562 lncRNA downstream 1064869 15756853 ~ 15758160 (-) True G150626
TU189515 lncRNA downstream 1203241 15619221 ~ 15619788 (-) True G150588
TU189513 lncRNA downstream 1242108 15578889 ~ 15580921 (-) True G150586
TU189814 lncRNA upstream 713122 17553718 ~ 17574839 (-) False AMCG00000533
TU189830 lncRNA upstream 844969 17685565 ~ 17719171 (-) True AMCG00000529
TU189862 lncRNA upstream 923994 17764590 ~ 17765401 (-) True G150852
TU189863 lncRNA upstream 925351 17765947 ~ 17766735 (-) True G150853
TU189880 lncRNA upstream 938632 17779228 ~ 17800956 (-) False G150865
AMCG00000515 mRNA downstream 14278 16804719 ~ 16808751 (-) True AMCG00000515
AMCG00000519 mRNA downstream 28708 16793575 ~ 16794321 (-) True AMCG00000519
AMCG00000497 mRNA downstream 64591 16749389 ~ 16758438 (-) True AMCG00000497
AMCG00000496 mRNA downstream 86278 16722174 ~ 16736751 (-) True AMCG00000496
AMCG00000488 mRNA downstream 133383 16687105 ~ 16689646 (-) True AMCG00000488
AMCG00000516 mRNA upstream 25213 16865809 ~ 16883174 (-) True AMCG00000516
AMCG00000500 mRNA upstream 44448 16885044 ~ 16903230 (-) True AMCG00000500
AMCG00000499 mRNA upstream 87012 16927608 ~ 16935797 (-) True AMCG00000499
AMCG00000501 mRNA upstream 97181 16937777 ~ 16942568 (-) True AMCG00000501
AMCG00000534 mRNA upstream 616393 17456989 ~ 17459798 (-) True AMCG00000534
TU189419 other downstream 1531793 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 1600286 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 2250597 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 2996320 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 4280719 12522520 ~ 12542310 (-) True G149847
TU189969 other upstream 1166500 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 1570892 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 1572244 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 1573459 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 1574926 18415522 ~ 18415841 (-) True G151090

Expression Profile