RNA id: TU189863


Basic Information

Item Value
RNA id TU189863
length 534
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G150853
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17765947 ~ 17766735 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGCCTGATGAGGGCTGGGTCCAGGGTCTCTATCCTGTTTGTGGCCATGATGACTTTAACGTCCCCTCGAGAGTCGAAGCCATCCAGCTGATTCAAGAGCTCCAGCATGGTCCTCTGGATCTCACGCTCCCCCCCGGAGTTGGAGTCATACCTGCCGAGGAAACGGGGGGAAAAGTATTGTGATCAAGCCGCACATTTGAACTGAACGATTTTCTCAAGGTCAAGTCTTTCAGGCCTTTTTTACCTCTTCGTCCCAATGGCGTCAATCTCATCGATGAACACGATGGAGGGCGCGTGCTCCTCGGCCACCCTGAACAGCTCCCTGACCAGCTTGGGCCCGTCGCCCAGGTACTTCTGGATGAGCTCAGAGCCGACCACCCGCAGGAACGTGGCCGAGGTCTGGTTGGCCACCGCCTTCGCCAGCAGAGTCTTCCTGTGCCGGGGGCCCCATACAGAATAACTCCCTTTGGAGGCTTGATTCCCATCTCCTCGTAATACTCTGGGTGGGTGAGAGGCAACTCCACTGATTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189862 lncRNA downstream 546 17764590 ~ 17765401 (-) True G150852
TU189830 lncRNA downstream 46776 17685565 ~ 17719171 (-) True AMCG00000529
TU189814 lncRNA downstream 191108 17553718 ~ 17574839 (-) False AMCG00000533
TU189694 lncRNA downstream 925351 16823029 ~ 16840596 (-) True G150731
TU189693 lncRNA downstream 929344 16834386 ~ 16836603 (-) True AMCG00000518
TU189880 lncRNA upstream 12493 17779228 ~ 17800956 (-) False G150865
TU189879 lncRNA upstream 24327 17791062 ~ 17800956 (-) True G150865
TU189900 lncRNA upstream 109847 17876582 ~ 17877124 (-) False AMCG00000521
TU190005 lncRNA upstream 332843 18099578 ~ 18100896 (-) True G150965
TU190137 lncRNA upstream 538350 18305085 ~ 18307705 (-) False AMCG00000559
AMCG00000529 mRNA downstream 47316 17711399 ~ 17718631 (-) False AMCG00000529
AMCG00000510 mRNA downstream 125383 17612034 ~ 17640564 (-) True AMCG00000510
AMCG00000511 mRNA downstream 165457 17597460 ~ 17600490 (-) True AMCG00000511
AMCG00000533 mRNA downstream 187564 17553753 ~ 17578383 (-) True AMCG00000533
AMCG00000535 mRNA downstream 213080 17545363 ~ 17552867 (-) True AMCG00000535
AMCG00000528 mRNA upstream 1348 17768083 ~ 17772745 (-) True AMCG00000528
AMCG00000523 mRNA upstream 7065 17773800 ~ 17789068 (-) True AMCG00000523
AMCG00000524 mRNA upstream 54036 17820771 ~ 17865282 (-) True AMCG00000524
AMCG00000522 mRNA upstream 100692 17867427 ~ 17873428 (-) True AMCG00000522
AMCG00000521 mRNA upstream 109634 17876369 ~ 17878350 (-) True AMCG00000521
TU189692 other downstream 931621 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 2474711 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 2543204 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3193515 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 3939238 13823954 ~ 13826709 (-) True G150138
TU189969 other upstream 240361 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 644753 18411488 ~ 18412525 (-) True G151087
TU190178 other upstream 646105 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 647320 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 648787 18415522 ~ 18415841 (-) True G151090

Expression Profile