RNA id: TU190177


Basic Information

Item Value
RNA id TU190177
length 1038
RNA type TUCP
GC content 0.54
exon number 1
gene id G151087
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18411488 ~ 18412525 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTGTAGTACCATTAACACTTCAGTAATAGTTAGTTTTACGCAGTGAGTAGTGAGAGAGGACGCTAATCGTTTTTTGCACCGTTGGTCTCTTGGTGGACTTCAGTGAACCGCCCTGTGAAAGTTACACACCCACCCACGGCCTGTACAACTTGAGCCGTCCGGACTACCACAACACACTCTTACTGCTGTCAATCTCCGAAAAAATTAAACGCGAAGCTTGATATATAAACGTGTTGTTTCATATCATTGGACAAACACAAGACGGCTTTTGATGGTTAAATGTGATCCTTCTGTTCGGTTGGTTTTGGTCCGTTTCAGGGCAGGTTAACGGCTCATCCGAGTCCGTTATTAACCGTTAACTGATGCTGTAATGGAGAAGCTCCCGTTGgctgcagtttgtgtttgtttgcagacAAAACCCTGTCGATCATGCAAAGCAAATCTCTGCGCCCGGTCTCTCGCAGGCAGGCAGGTAGGCAGGCTGCACCTCTGCCTGGTTTCTAAGGGTGAACGTCAACAAACCAGCCGGAGCACAATAACacaacaccccccacacacagccaATGCCACCTGCAGCTAGCCAGTGAGAGAGCAAAGAAACTAAGTGCGGCTACATCCGACTTCCTCCAACTTTCTTCCTGCGCTGTTACACTGTGAAGGGGGGATGCACCGGCTCTAGTTGGGGGGCTGCTGAAAAATGAttgacacaataataataatcataataataatgccacaCAATCGCGCAGGTGATGATACGCCAGCGTTGTTGTGTGTGGCTGGCAGACAGCAGCCCACCCCGACCAAGACCCCCAGGCTAGCGGTGAAAGCAGCGAATGCACGCCGGGCTACACACTCACTCCTCCGCCTGCCTGCCCGCCTGCCTGCGCGTCGCTCGGTCGCTCGGTCTGCGGGAGACGGTGAGGATTTGGCGAGATCAGCGCGATGTGCAGCGCCGGCCCCTTGTGTTTTGCGCCGCGTCCCGGAGGCGCACTTCCGCCACACTGCCGGGCTGCTGCCCTCACTCCCGCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190156 lncRNA downstream 37391 18373798 ~ 18374097 (-) True G151071
TU190137 lncRNA downstream 103783 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 310592 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 534364 17876582 ~ 17877124 (-) False AMCG00000521
TU189880 lncRNA downstream 610532 17779228 ~ 17800956 (-) False G150865
TU190224 lncRNA upstream 24758 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 37019 18449544 ~ 18522790 (-) True G151122
TU190240 lncRNA upstream 82124 18494649 ~ 18565715 (-) True G151133
TU190259 lncRNA upstream 170883 18583408 ~ 18584113 (-) True G151150
TU190279 lncRNA upstream 232344 18644869 ~ 18646177 (-) True G151167
AMCG00000560 mRNA downstream 21820 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000556 mRNA downstream 49602 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000557 mRNA downstream 63504 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000558 mRNA downstream 97713 18311055 ~ 18313775 (-) True AMCG00000558
AMCG00000559 mRNA downstream 103695 18305131 ~ 18307793 (-) True AMCG00000559
AMCG00000554 mRNA upstream 7477 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000574 mRNA upstream 99521 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000575 mRNA upstream 113102 18525627 ~ 18533841 (-) True AMCG00000575
AMCG00000576 mRNA upstream 153840 18566365 ~ 18569134 (-) True AMCG00000576
AMCG00000582 mRNA upstream 189360 18601885 ~ 18602337 (-) True AMCG00000582
TU189969 other downstream 401638 18007096 ~ 18009850 (-) False AMCG00000539
TU189692 other downstream 1577162 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 3120252 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 3188745 15213414 ~ 15222743 (-) True AMCG00000464
TU189195 other downstream 3839056 14569962 ~ 14572432 (-) True AMCG00000436
TU190178 other upstream 315 18412840 ~ 18413465 (-) True G151088
TU190179 other upstream 1530 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 2997 18415522 ~ 18415841 (-) True G151090
TU190562 other upstream 921452 19333977 ~ 19336732 (-) False AMCG00000599
TU190711 other upstream 1231425 19643950 ~ 19646475 (-) False AMCG00000618

Expression Profile