RNA id: TU190178


Basic Information

Item Value
RNA id TU190178
length 626
RNA type TUCP
GC content 0.69
exon number 1
gene id G151088
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18412840 ~ 18413465 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCGTCTCGGTGGCCGTGTTGATGACCAGTGAGTACTCGGCGATGCACAGGGTGACCCAGCTCAGCACGAACACCGGCACGGCCGCCCCGGTGCCGCTGAACAGCGCCACCAGCCGGTCCAGCAGCAGGTACCAGGTGCCCAGCCCGCACAGAGCCCCCGCCAGGGCGGCGTGCAGCACGATGTTCGCAGCAAACTTCTTCCCGGGCACAATGAAGCGGACGGTGTCGGCACTGGCGCAGCCGGCGAACTCCACCTCCTCCTCGTCGGCCAGGATGCTGGGGGTCTGCAGCCGCTGCACGGGCACCGCCCTGCGCAGCACCCACGCGCACAGCGCCTGCACCCCCAGCGCCACGCACAGCATCAACCCCCCCGCCAGCGCGGCCGCCTGGTAGTCCTCCAGCAGCCGCAGTTGGTGCAGCAGCGTGGCCGCCCCCCCGAGCAGCCAGGGCGCCAGGAACAGGATCGCCTGGTTGGCGTAGACGTACGGTGGGGCGCAGAAGCCCAGCTTGAAGCGGGGGCCCCCCAGAACGGTCTGGGGGAACCGCTTCCAGAAGAAGTCCTGCTTATACTCATTGAGCAGTGGCACGTCCGGGCCCATCCTGATCAGCGCCAGCAGGAGGCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190156 lncRNA downstream 38743 18373798 ~ 18374097 (-) True G151071
TU190137 lncRNA downstream 105135 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 311944 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 535716 17876582 ~ 17877124 (-) False AMCG00000521
TU189879 lncRNA downstream 611884 17791062 ~ 17800956 (-) True G150865
TU190224 lncRNA upstream 23818 18437283 ~ 18453200 (-) True G151119
TU190227 lncRNA upstream 36079 18449544 ~ 18522790 (-) True G151122
TU190240 lncRNA upstream 81184 18494649 ~ 18565715 (-) True G151133
TU190259 lncRNA upstream 169943 18583408 ~ 18584113 (-) True G151150
TU190279 lncRNA upstream 231404 18644869 ~ 18646177 (-) True G151167
AMCG00000560 mRNA downstream 23172 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000556 mRNA downstream 50954 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000557 mRNA downstream 64856 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000558 mRNA downstream 99065 18311055 ~ 18313775 (-) True AMCG00000558
AMCG00000559 mRNA downstream 105047 18305131 ~ 18307793 (-) True AMCG00000559
AMCG00000554 mRNA upstream 6537 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000574 mRNA upstream 98581 18512046 ~ 18515368 (-) True AMCG00000574
AMCG00000575 mRNA upstream 112162 18525627 ~ 18533841 (-) True AMCG00000575
AMCG00000576 mRNA upstream 152900 18566365 ~ 18569134 (-) True AMCG00000576
AMCG00000582 mRNA upstream 188420 18601885 ~ 18602337 (-) True AMCG00000582
TU190177 other downstream 315 18411488 ~ 18412525 (-) True G151087
TU189969 other downstream 402990 18007096 ~ 18009850 (-) False AMCG00000539
TU189692 other downstream 1578514 16808092 ~ 16834326 (-) True G150729
TU189419 other downstream 3121604 15289352 ~ 15291236 (-) False AMCG00000475
TU189371 other downstream 3190097 15213414 ~ 15222743 (-) True AMCG00000464
TU190179 other upstream 590 18414055 ~ 18414558 (-) True G151089
TU190180 other upstream 2057 18415522 ~ 18415841 (-) True G151090
TU190562 other upstream 920512 19333977 ~ 19336732 (-) False AMCG00000599
TU190711 other upstream 1230485 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 2218624 20632089 ~ 20634946 (-) True G151593

Expression Profile