RNA id: TU190240


Basic Information

Item Value
RNA id TU190240
length 557
lncRNA type read_through
GC content 0.56
exon number 2
gene id G151133
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18494649 ~ 18565715 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGTTTCTGCTGCTCAGGGATGACTGGGTATCTGTAGCTGAGGCCCCCCGCCACACCCGTCCCCCCGGCTCTGGCACTGTGAGCTCAGAAATGAAAACGCAGggttgtgatttttattttattgaaaatgttttattaaaaaaaactgtacatctTAGGTTGACCAAAACAACTTTTGAGCGAGATCACGTGGCAGTGTTGAGCCTGCAGCTACCAACGCGGTGGTGGGGGGCAGTGCTGGTTTGTACGGTGGCCcctccaccccacacacatccaAGCACAGAGGCCACACCGGCCCAGAGAACCTGATGGAGTCGATCTGGACATCTGTCAGGAGGGGGGTTTAAGAGTCTATATATTCCAGATAAAACCACAGGGATCGTAAGCGTCGCTGTTGTgaccgctctctctctccccctcctcccggCCAAGTGCTCGGCCCTCAGTCTGTGGTGCGGTGGGGAGCAGTGGGAGTTTAGAGCGGCGAATAGAAGAGGCCACTGAACGCGTCCTGCACGGCCCGGTAGCAGGCCAAGCTGGAGGTGTACCCCCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190224 lncRNA downstream 41449 18437283 ~ 18453200 (-) True G151119
TU190156 lncRNA downstream 120552 18373798 ~ 18374097 (-) True G151071
TU190137 lncRNA downstream 186944 18305085 ~ 18307705 (-) False AMCG00000559
TU190005 lncRNA downstream 393753 18099578 ~ 18100896 (-) True G150965
TU189900 lncRNA downstream 617525 17876582 ~ 17877124 (-) False AMCG00000521
TU190259 lncRNA upstream 17693 18583408 ~ 18584113 (-) True G151150
TU190279 lncRNA upstream 79154 18644869 ~ 18646177 (-) True G151167
TU190327 lncRNA upstream 225660 18791375 ~ 18824668 (-) True G151198
TU190356 lncRNA upstream 290585 18856300 ~ 18856497 (-) True G151218
TU190486 lncRNA upstream 423360 18989075 ~ 18992844 (-) True G151291
AMCG00000554 mRNA downstream 69236 18420002 ~ 18425413 (-) True AMCG00000554
AMCG00000560 mRNA downstream 104981 18379788 ~ 18389668 (-) True AMCG00000560
AMCG00000556 mRNA downstream 132763 18357174 ~ 18361886 (-) True AMCG00000556
AMCG00000557 mRNA downstream 146665 18336931 ~ 18347984 (-) True AMCG00000557
AMCG00000558 mRNA downstream 180874 18311055 ~ 18313775 (-) True AMCG00000558
AMCG00000576 mRNA upstream 650 18566365 ~ 18569134 (-) True AMCG00000576
AMCG00000582 mRNA upstream 36170 18601885 ~ 18602337 (-) True AMCG00000582
AMCG00000570 mRNA upstream 182335 18748050 ~ 18755308 (-) True AMCG00000570
AMCG00000589 mRNA upstream 209267 18774982 ~ 18804311 (-) True AMCG00000589
AMCG00000588 mRNA upstream 259186 18824901 ~ 18831169 (-) True AMCG00000588
TU190180 other downstream 78808 18415522 ~ 18415841 (-) True G151090
TU190179 other downstream 80091 18414055 ~ 18414558 (-) True G151089
TU190178 other downstream 81184 18412840 ~ 18413465 (-) True G151088
TU190177 other downstream 82124 18411488 ~ 18412525 (-) True G151087
TU189969 other downstream 484799 18007096 ~ 18009850 (-) False AMCG00000539
TU190562 other upstream 768262 19333977 ~ 19336732 (-) False AMCG00000599
TU190711 other upstream 1078235 19643950 ~ 19646475 (-) False AMCG00000618
TU190879 other upstream 2066374 20632089 ~ 20634946 (-) True G151593
TU190947 other upstream 2180956 20746671 ~ 20747321 (-) False AMCG00000635
TU191039 other upstream 2361034 20926749 ~ 20935429 (-) True AMCG00000653

Expression Profile